NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49748.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49748.1 Public Mus musculus 16 Dnaja3 23 108 98 CCDS HistoryNCBI Gene:83945Re-query CCDS DB by CCDS ID:49748.1Re-query CCDS DB by GeneID:83945See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49748.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115854.3 ENSMUSP00000111520.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115854.3Link to Ensembl Protein Viewer:ENSMUSP00000111520.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115854Re-query CCDS DB by Protein ID:ENSMUSP00000111520
Original member Current member NCBI NM_001135112.1 NP_001128584.1 Accepted alive Link to Nucleotide Sequence:NM_001135112.1Link to Protein Sequence:NP_001128584.1Re-query CCDS DB by Nucleotide ID:NM_001135112Re-query CCDS DB by Protein ID:NP_001128584Link to BLAST:NP_001128584.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128584.1 453 Q99M87-2 453 100% 0 0

Chromosomal Locations for CCDS 49748.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 4684134 4684344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4687237 4687370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4689981 4690064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4693212 4693412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4694364 4694516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4696389 4696536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4697251 4697315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4699749 4699877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4701169 4701284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4702211 4702308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4706568 4706590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGGCTGCGTGGTGTTCCCCACGCTGGTTGAGGGTGGCAGTGGGGACTCCCCGGCTGCCGGCTGCAGCGG
GGAGAGGGGTCCAGCAGCCCCAGGGGGGCGTAGTGGCAACATCCCTGTGTCGCAAGCTGTGCGTCTCTGC
CTTCGGGCTTTCCATGGGCGCTCACGGCCCCCGGGCGCTGCTGACATTGAGACCCGGTGTCCGCCTCACA
GGAACAAAAAGTTTCCCTTTTGTTTGTACCACCTCTTTCCACACAAGTGCTTCTTTGGCCAAAGATGATT
ATTACCAGATCCTGGGAGTGCCCCGAAATGCCAGCCAGAAAGATATCAAGAAAGCCTATTATCAGCTTGC
CAAGAAATATCATCCAGACACAAATAAGGATGATCCCAAAGCCAAGGAGAAGTTTTCCCAGCTGGCAGAA
GCTTATGAGGTGTTGAGCGATGAAGTGAAGAGGAAGCAGTATGACGCTTACGGCTCTGCTGGCTTTGACC
CTGGCACCAGCAGCTCTGGGCAGGGCTACTGGAGAGGAGGTCCCTCTGTTGACCCCGAGGAGTTGTTCAG
GAAGATCTTTGGGGAGTTCTCATCTTCTCCTTTTGGTGATTTCCAGAATGTGTTTGATCAGCCTCAGGAA
TACATCATGGAATTGACATTCAATCAAGCTGCCAAGGGTGTCAACAAAGAGTTCACTGTGAACATTATGG
ATACCTGTGAGCGCTGTGACGGCAAGGGGAACGAGCCTGGAACCAAAGTGCAGCATTGCCATTACTGTGG
CGGCTCGGGCATGGAAACTATCAATACAGGGCCTTTTGTGATGCGTTCCACATGTCGGAGATGTGGTGGC
CGGGGCTCCATCATCACAAATCCCTGTGTGGTCTGCAGGGGAGCAGGACAAGCCAAGCAGAAGAAGCGCG
TGACAATTCCTGTGCCTGCAGGAGTTGAAGATGGTCAGACTGTAAGGATGCCAGTGGGAAAACGAGAAAT
TTTTGTCACATTCAGGGTGCAGAAAAGCCCTGTGTTCCGGAGGGACGGTGCAGACATCCACTCGGACCTC
TTTATTTCAATAGCTCAAGCTATTCTTGGGGGCACAGCCAAAGCCCAGGGCCTGTATGAGACAATCAATG
TGACGATCCCTGCAGGGATTCAGACAGACCAGAAGATTCGTTTGACTGGAAAAGGCATCCCCCGGATTAA
TAGCTATGGCTATGGTGACCACTACATTCACATCAAGATCAGAGTTCCAAAGAGGCTGAGCAGTAGGCAG
CAGAACCTGATCCTGAGCTATGCCGAGGATGAGACTGACGTGGAGGGGACGGTTAATGGAGTCACCCACA
CAAGCACTGGAAAGCGGTCAACTGGAAACTAA

Translation (453 aa):
MAAWCSPRWLRVAVGTPRLPAAAGRGVQQPQGGVVATSLCRKLCVSAFGLSMGAHGPRALLTLRPGVRLT
GTKSFPFVCTTSFHTSASLAKDDYYQILGVPRNASQKDIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAE
AYEVLSDEVKRKQYDAYGSAGFDPGTSSSGQGYWRGGPSVDPEELFRKIFGEFSSSPFGDFQNVFDQPQE
YIMELTFNQAAKGVNKEFTVNIMDTCERCDGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGG
RGSIITNPCVVCRGAGQAKQKKRVTIPVPAGVEDGQTVRMPVGKREIFVTFRVQKSPVFRRDGADIHSDL
FISIAQAILGGTAKAQGLYETINVTIPAGIQTDQKIRLTGKGIPRINSYGYGDHYIHIKIRVPKRLSSRQ
QNLILSYAEDETDVEGTVNGVTHTSTGKRSTGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH