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Report for CCDS49820.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49820.1 Public Mus musculus 16 Atp13a3 23 108 98 CCDS HistoryNCBI Gene:224088Re-query CCDS DB by CCDS ID:49820.1Re-query CCDS DB by GeneID:224088See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49820.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061350.12 ENSMUSP00000051645.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061350.12Link to Ensembl Protein Viewer:ENSMUSP00000051645.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000061350Re-query CCDS DB by Protein ID:ENSMUSP00000051645
Original member Current member NCBI NM_001128094.1 NP_001121566.1 Accepted alive Link to Nucleotide Sequence:NM_001128094.1Link to Protein Sequence:NP_001121566.1Re-query CCDS DB by Nucleotide ID:NM_001128094Re-query CCDS DB by Protein ID:NP_001121566Link to BLAST:NP_001121566.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121566.1 1219 Q5XF89-1 1219 100% 0 0

Chromosomal Locations for CCDS 49820.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 30315704 30315901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30322872 30322952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30328956 30329044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30332199 30332386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30333759 30333927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30336190 30336262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30337502 30337598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30338432 30338541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30338627 30338669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30339613 30339692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30339776 30339898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30340223 30340398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30341153 30341277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30343434 30343554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30343643 30343796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30343890 30343907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30344522 30344638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30347626 30347776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30348050 30348111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30349685 30349873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30350963 30351120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30351229 30351408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30352268 30352399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30354232 30354304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30355753 30355887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30357205 30357274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30359669 30359749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30361420 30361490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30361814 30361984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30362576 30362749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30366835 30366885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3660 nt):
ATGGACAAAGAAGAAAGGAAGACTATCAACAAGGGTCAAGAAGATGAAATGGAGATACATGGCTATAACT
TATGCCGCTGGAAGCTTGCCATGGTTTTTGTAGGAGTGATTTGTACTGGTGGTTTTCTCCTCCTCCTCCT
CTACTGGCTGCCTGAGTGGCGAGTGAAAGCCACATGTGTTAGAGCTGCAGTTAAAGACTGTGAAGTGGTG
CTTCTCAGGACAACTGATGAATTTAGAGTATGGTTTTGTGCAAAAATTCACTTTCTTCCTGTGGAGAATC
AACCAAATTTGAATGCAAAATGTTTAGTTAATGAGGTTTCTAATGGCCATGCTGTTCATCTGACTGAAGA
AAATAGATGCGAGATGAATAAATACTCACAGAGTCAGTCACAACAGATGCGTTATTTTACCCACCATAGC
ATAAGATATTTCTGGAATGATGCCATTCACAATTTTGATTTCTTAAAGGGACTGGATGAAGGTGTATCTT
GTGCATCACTTTATGAAAAGCATAGTGCAGGACTGACACAGGGGATGCATGCCTACAGAAAGTTGATTTA
TGGAGTAAATGAAATTGCTGTGAAAGTGCCTTCTGTTTTTAAGCTTCTAATTAAAGAGGTTCTCAACCCA
TTTTACATTTTCCAGCTCTTCAGTGTTATCCTGTGGAGCGTTGATGAGTACTATTACTATGCTCTAGCCA
TTGTGATCATGTCCGTAGTATCCATTATAAGTTCACTATATTCCATTAGAAAGCAATATGTTATGTTACA
TGACATGGTGGCAACTCACAGTACCGTGAGAGTTTCAGTCTGTAGAGAAAATGAAGAAATAGAAGAGATC
TTTTCTACAGACCTTGTGCCGGGAGACGTCATGATCATTCCATTAAATGGGACAGTCATGCCTTGTGATG
CAGTACTTATTAATGGTACTTGCATTGTAAATGAAAGCATGTTAACAGGAGAAAGTGTTCCAGTGACAAA
GACTAATTTGCCAAATCCTTCAGTGGATGTGAAAGGAATGGGGGAGGAGCAGTACAGCCCAGAGACACAC
AAGCGGCACACTTTGTTTTGTGGGACGACTGTTATTCAGACCCGTTTCTACACTGGAGAACTTGTGAAAG
CCATAGTAGTTAGAACAGGATTTAGTACTTCCAAAGGACAGCTTGTTCGTTCTATACTGTATCCCAAGCC
AACTGACTTTAAACTCTATAGAGATGCCTACTTGTTTCTGCTGTGTCTTGTGGTGGTGGCTGGAATTGGA
TTTATCTACACAATCATCAATAGCATCCTAAATGAGAAAGAAGTTCAAGAAATAATTATTAAGTCTCTTG
ATATCATTACAATTACTGTGCCACCTGCTCTTCCTGCTGCAATGACTGCTGGGATTGTGTATGCTCAGAG
AAGACTGAAAAAAGTTGGGATTTTCTGTATTAGTCCCCAGAGGATAAACATCTGTGGACAGCTGAACCTT
GTTTGCTTTGACAAGACTGGAACTCTTACCGAAGATGGTTTAGATCTGTGGGGAATTCAGCGAGTGGAAA
ATACCCGATTTCTTTTACCAGAAGACAATGTTTGCAGTGAGATGTTGGTAAAATCTCAATTTGTTGCTTG
TATGGCTACTTGTCATTCACTTACAAAAATCGAAGGTGTACTTTCTGGTGACCCACTTGATTTGAAAATG
TTTGAAGCCATTGGATGGATTCTGGAAGAAGCAACTGAAGAAGAAACAGCACTTCATAACCGGATCATGC
CTACTGTGGTTCGTCCTTCCAAACAACTGCTTCCTGAACCTACAACTGCAGGAAACCAAGAAATGGAGCT
GTTTGAACTTCCAGCTATTTATGAGATAGGAATTGTTCGCCAGTTTCCATTTTCTTCTGCCTTGCAACGG
ATGAGTGTGGTTGCAAGGACACTAGGTGAGAAGAGGATGGATGCCTACATGAAGGGGGCCCCTGAGGTTG
TCGCCAGTCTCTGCAAACCGGAAACAGTTCCAGTTGATTTTGAGAAAGTGTTAGAAGATTATACCAAACA
AGGTTTCCGTGTAATTGCTCTTGCACACAGAAAATTGGAGTCAAAGCTGACCTGGCATAAAGTACAGCAT
ATTAGCAGAGATGCCATTGAAAACAACATGGATTTTATGGGATTGATTATAATGCAGAACAAATTGAAGC
AGGAAACCCCTGCAGTACTTGAAGATTTGCATAAAGCCAACATTCGAACTGTCATGGTCACAGGAGACAA
CATGTTGACGGCTGTCTCTGTGGCCAGAGACTGTGGGATGATTCTACCTCAGGATAAAGTTATTATTGCT
GAAGCATTACCTCCAAAGGATGGAAAAGTTGCCAAGATCAATTGGCATTATACAGACTCCCTGTCACAGT
GTAGTGAATCATCAGCCATTGACTCAGAGGCTATTCCAATCAAACTTGCCCATGATAGTTTAGAGGATCT
TGAGGTGACTCGCTATCATTTTGCGATGAATGGAAAGTCATTTTCGGTGATACTGGAACATTTTCAAGAT
CTTGTTCCTAAGTTGATGTTGCATGGTACTGTGTTTGCTCGAATGGCACCGGATCAGAAGACACAATTGG
TGGAGGCATTGCAGAACGTAGACTACTTTGTTGGGATGTGCGGTGATGGTGCAAATGATTGTGGTGCTTT
GAAGAGGGCACATGGTGGCATTTCCTTATCTGAGCTTGAAGCTTCCGTGGCATCTCCTTTTACTTCTAAG
ACACCCAGTATCTCCTGTGTGCCAAACCTTATCAGGGAAGGTCGTGCTGCTTTAATGACGTCCTTCTGTG
TGTTTAAATTTATGGCGTTATACAGCATCATCCAGTACTTCAGTGTTACTCTCCTGTATTCTATCTTGAG
TAACCTGGGAGACTTTCAGTTTCTCTTCATTGATCTGGCAATCATTTTGGTAGTAGTATTTACAATGAGT
TTAAATCCTGCCTGGAAAGAGCTTGTGGCACAGAGACCACCTTCAGGCCTTATATCTGGGGCGCTCCTCT
TCTCCGTCTTGTCTCAGATTGTGATCTCCGTTGGATTTCAGTCGCTGGGTTTTTTCTGGGTCAAGCAGTA
TAAAGTGTGCGATCCAAATTCAGATGTTTGTAATACAACAAGAAGCGCATGTTGGAACTCGTCACACTTA
TACAATGGGACTGAACTCGATTCGTGTAAAATACAAAATTATGAAAATACCACAGTATTTTTTATCTCCA
GTTTCCAGTACCTCACAGTGGCGGTTGCCTTTTCAAAAGGAAAACCATTCAGGCAGCCTTGCTACAAGAA
TTATTTTTTTGTTATATCTGTGATTATTTTGTATGTTTTCATATTATTCATCATGTTGCATCCAGTTGCC
TCTGTTGACCAGGTTCTTGAGATTATGTGTGTACCATACCAGTGGCGCATATATATGCTTATCATTGTTC
TTATCAATGCCTTCGTGTCTATCACGGTGGAGGAGTCAGTGGATCGGTGGGGAAAATGCTGTTTGTCCTG
GGCCCTGAGCTGTAGAAAGAAAACTCCAAAAGCAAAGTACATGTACTTAGCACAGGAGCTCCGCTTTGAT
CCTGAGTGGCCGCCTAAACCTCAGACAACGACGGAAGCCAAAGCTGTAGTAAAGGAGAATGGATCATGTC
AGATTATCACCATAGCATAA

Translation (1219 aa):
MDKEERKTINKGQEDEMEIHGYNLCRWKLAMVFVGVICTGGFLLLLLYWLPEWRVKATCVRAAVKDCEVV
LLRTTDEFRVWFCAKIHFLPVENQPNLNAKCLVNEVSNGHAVHLTEENRCEMNKYSQSQSQQMRYFTHHS
IRYFWNDAIHNFDFLKGLDEGVSCASLYEKHSAGLTQGMHAYRKLIYGVNEIAVKVPSVFKLLIKEVLNP
FYIFQLFSVILWSVDEYYYYALAIVIMSVVSIISSLYSIRKQYVMLHDMVATHSTVRVSVCRENEEIEEI
FSTDLVPGDVMIIPLNGTVMPCDAVLINGTCIVNESMLTGESVPVTKTNLPNPSVDVKGMGEEQYSPETH
KRHTLFCGTTVIQTRFYTGELVKAIVVRTGFSTSKGQLVRSILYPKPTDFKLYRDAYLFLLCLVVVAGIG
FIYTIINSILNEKEVQEIIIKSLDIITITVPPALPAAMTAGIVYAQRRLKKVGIFCISPQRINICGQLNL
VCFDKTGTLTEDGLDLWGIQRVENTRFLLPEDNVCSEMLVKSQFVACMATCHSLTKIEGVLSGDPLDLKM
FEAIGWILEEATEEETALHNRIMPTVVRPSKQLLPEPTTAGNQEMELFELPAIYEIGIVRQFPFSSALQR
MSVVARTLGEKRMDAYMKGAPEVVASLCKPETVPVDFEKVLEDYTKQGFRVIALAHRKLESKLTWHKVQH
ISRDAIENNMDFMGLIIMQNKLKQETPAVLEDLHKANIRTVMVTGDNMLTAVSVARDCGMILPQDKVIIA
EALPPKDGKVAKINWHYTDSLSQCSESSAIDSEAIPIKLAHDSLEDLEVTRYHFAMNGKSFSVILEHFQD
LVPKLMLHGTVFARMAPDQKTQLVEALQNVDYFVGMCGDGANDCGALKRAHGGISLSELEASVASPFTSK
TPSISCVPNLIREGRAALMTSFCVFKFMALYSIIQYFSVTLLYSILSNLGDFQFLFIDLAIILVVVFTMS
LNPAWKELVAQRPPSGLISGALLFSVLSQIVISVGFQSLGFFWVKQYKVCDPNSDVCNTTRSACWNSSHL
YNGTELDSCKIQNYENTTVFFISSFQYLTVAVAFSKGKPFRQPCYKNYFFVISVIILYVFILFIMLHPVA
SVDQVLEIMCVPYQWRIYMLIIVLINAFVSITVEESVDRWGKCCLSWALSCRKKTPKAKYMYLAQELRFD
PEWPPKPQTTTEAKAVVKENGSCQIITIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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