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Report for CCDS49904.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49904.1 Public Mus musculus 16 Tiam1 23 108 98 CCDS HistoryNCBI Gene:21844Re-query CCDS DB by CCDS ID:49904.1Re-query CCDS DB by GeneID:21844See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49904.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164263.8 ENSMUSP00000126020.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164263.8Link to Ensembl Protein Viewer:ENSMUSP00000126020.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000164263Re-query CCDS DB by Protein ID:ENSMUSP00000126020
Original member Current member NCBI NM_001145887.1 NP_001139359.1 Accepted alive Link to Nucleotide Sequence:NM_001145887.1Link to Protein Sequence:NP_001139359.1Re-query CCDS DB by Nucleotide ID:NM_001145887Re-query CCDS DB by Protein ID:NP_001139359Link to BLAST:NP_001139359.1

Chromosomal Locations for CCDS 49904.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 89789122 89789591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89793002 89793174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89794678 89794765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89798032 89798134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89798650 89798708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89799961 89800069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89804693 89804811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89805083 89805262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89809368 89809476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89811470 89811595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89811885 89811953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89812948 89813127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89817961 89818044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGTCTTCGCTGTGGAAGATCAAGCGCAAGCCCAGGGTCGAGAGCGACAGGGCTGGCGACTCTCTCTACC
GCACACTTCACCTGAGCACAGAACAGGTTGCAGCGTTTTGCCGGAGTCTGCACGAGATGAGCCCCTCTGA
CTCAAGCCCGTCCCCTCAGGATGCCACAAGCCCTCAGCTGGCAACCACACGACAGCTGTCGGATGCGGAT
AAGCTGCGCAAGGTGATCTGTGAACTGCTGGAGACTGAACGCACCTATGTGAAAGACTTAAACTGCCTCA
TGGAGAGATACCTGAAGCCCCTTCAGAAGGAGACCTTTCTCACCCAGGATGAGCTTGATGTACTTTTTGG
AAATTTAACCGAAATGGTGGAGTTTCAAGTCGAGTTCCTTAAGACTCTAGAAGATGGAGTAAGACTGGTC
CCTGACTTGGAAAAGCTGGAGAAGGTTGACCAGTTCAAGAAAGTGCTCTTCTCTCTGGGGGGATCCTTCC
TGTACTACGCGGACCGCTTCAAGCTCTACAGTGCCTTCTGTGCGAGCCACACAAAAGTCCCCAAGGTCCT
GGTGAAAGCCAAGACGGACACAGCCTTCAAGGCGTTCCTCGATGCCCAGAACCCGAGGCAGCAGCACTCA
TCCACGCTGGAGTCTTACCTCATCAAGCCCATCCAGAGGGTCCTCAAGTACCCGCTTCTGCTCAGGGAGC
TGTTTGCGCTGACCGATGCGGAGAGCGAGGAACACTACCACCTGGACGTGGCCATCAAGACTATGAACAA
GGTCGCCAGTCACATCAATGAGATGCAGAAGATCCACGAAGAGTTTGGTGCTGTGTTTGACCAGCTGATT
GCTGAGCAGACGGGAGAGAAGAAAGAGGTTGCAGATCTGAGCATGGGTGACCTGCTCTTGCACACCAGCG
TCATCTGGCTGAACCCACCCGCCTCACTGGGAAAGTGGAAAAAGGAGCCAGAATTAGCAGCCTTCGTCTT
CAAAACGGCCGTGGTCCTTGTATATAAAGACGGTTCCAAGCAGAAGAAGAAACTTGTTGGCTCTCACAGG
CTGTCAATCTACGAGGAGTGGGACCCTTTCCGGTTTCGCCACATGATCCCTACCGAAGCTTTGCAGGTCC
GAGCTCTGCCCAGTGCAGATGCAGAGGCAAATGCGGTATGCGAAATTGTCCACGTGAAATCAGAGTCAGA
AGGGAGGCCCGAGCGGGTTTTCCACCTCTGCTGCAGTTCCCCAGAGAGCAGAAAGGACTTTCTGAAGTCT
GTGCATTCGATCCTGCGAGATAAACACAGAAGACAGCTCCTCAAAACGGAAAGCCTTCCGTCAGCCCAGC
AGTATGTCCCCTTTGGAGGCAAGAGATTGTGTGCGCTTAAAGGCGCCAGGCCGGCCATGAGCAGGGCAGT
GTCTGCCCCAAGCAAGTCTCTTGGGAGGAGGAGGCGGCGACTGGCCCGAAACAGGTTTACCATCGATTCA
GACGCCATCTCAGCCAGCAGCCCGGAGAAAGAGCCCCAGCAGCCCGCCGGTGGTGGGGACACTGACCGAT
GGGTAGAGGAACAGTTCGATCTTGCTCAGTACGAGGAGCAGGATGACATCAAGGAGACAGACATCCTCAG
TGACGATGACGAATTCTGTGAGTCCCTGAAGGGCGCCTCAGTGGACAGAGACCTTCAGGAGCAGCTTCAG
GCTGCCTCCATCAGTCAGCGGGCCCGAGGCCGGAGAACCCTCGATAGCCACGCCTCCCGCATGACACAGC
TCAAGAAGCAAGCGGCCCTCTCGGGCATCAACGGGGGCCTGGAGAGTGCGAGCGAGGAAGTCATTTGGGT
CAGGCGCGAAGACTTTGCCCCCTCCAGGAAACTGAACACGGAGATATGA

Translation (622 aa):
MSSLWKIKRKPRVESDRAGDSLYRTLHLSTEQVAAFCRSLHEMSPSDSSPSPQDATSPQLATTRQLSDAD
KLRKVICELLETERTYVKDLNCLMERYLKPLQKETFLTQDELDVLFGNLTEMVEFQVEFLKTLEDGVRLV
PDLEKLEKVDQFKKVLFSLGGSFLYYADRFKLYSAFCASHTKVPKVLVKAKTDTAFKAFLDAQNPRQQHS
STLESYLIKPIQRVLKYPLLLRELFALTDAESEEHYHLDVAIKTMNKVASHINEMQKIHEEFGAVFDQLI
AEQTGEKKEVADLSMGDLLLHTSVIWLNPPASLGKWKKEPELAAFVFKTAVVLVYKDGSKQKKKLVGSHR
LSIYEEWDPFRFRHMIPTEALQVRALPSADAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKS
VHSILRDKHRRQLLKTESLPSAQQYVPFGGKRLCALKGARPAMSRAVSAPSKSLGRRRRRLARNRFTIDS
DAISASSPEKEPQQPAGGGDTDRWVEEQFDLAQYEEQDDIKETDILSDDDEFCESLKGASVDRDLQEQLQ
AASISQRARGRRTLDSHASRMTQLKKQAALSGINGGLESASEEVIWVRREDFAPSRKLNTEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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