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Report for CCDS49916.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49916.1 Public Mus musculus 16 Runx1 23 108 98 CCDS HistoryNCBI Gene:12394Re-query CCDS DB by CCDS ID:49916.1Re-query CCDS DB by GeneID:12394See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49916.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168195.7 ENSMUSP00000131079.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168195.7Link to Ensembl Protein Viewer:ENSMUSP00000131079.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168195Re-query CCDS DB by Protein ID:ENSMUSP00000131079
Original member Current member NCBI NM_001111023.2 NP_001104493.1 Accepted alive Link to Nucleotide Sequence:NM_001111023.2Link to Protein Sequence:NP_001104493.1Re-query CCDS DB by Nucleotide ID:NM_001111023Re-query CCDS DB by Protein ID:NP_001104493Link to BLAST:NP_001104493.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104493.1 451 Q03347-1 451 99.7783% 0 1

Chromosomal Locations for CCDS 49916.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 92605655 92606124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92613599 92613760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92644154 92644345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92668708 92668812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92688976 92689132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92695484 92695753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGCGTATCCCCGTAGATGCCAGCACGAGCCGCCGCTTCACGCCGCCTTCCACCGCGCTGAGCCCCGGCA
AGATGAGCGAGGCGCTGCCGCTGGGCGCCCCGGATGGCGGCGCCGCCCTGGCCAGCAAGCTGAGGAGCGG
CGACCGCAGCATGGTGGAGGTACTAGCTGACCACCCTGGCGAGCTAGTGCGCACCGACAGCCCCAACTTC
CTCTGCTCCGTGCTACCCACTCACTGGCGCTGCAACAAGACCCTGCCCATCGCTTTCAAGGTGGTGGCAC
TGGGGGACGTCCCGGATGGCACTCTGGTCACCGTCATGGCAGGCAACGATGAAAACTACTCGGCAGAACT
GAGAAATGCTACCGCGGCCATGAAGAACCAGGTAGCGAGATTCAACGACCTCAGGTTTGTCGGGCGGAGC
GGTAGAGGCAAGAGCTTCACTCTGACCATCACCGTCTTTACAAATCCGCCACAAGTTGCCACCTACCATA
GAGCCATCAAAATCACAGTGGACGGCCCCCGAGAACCCCGAAGACATCGGCAGAAACTAGATGATCAGAC
CAAGCCCGGGAGTTTGTCCTTTTCCGAGCGGCTCAGTGAATTGGAGCAGCTGCGGCGCACGGCCATGAGG
GTCAGCCCGCACCACCCAGCCCCCACGCCCAACCCTCGGGCCTCCTTGAACCACTCCACTGCCTTTAACC
CTCAGCCTCAAAGTCAGATGCAGGATGCCAGGCAGATCCAGCCATCCCCACCGTGGTCCTATGACCAGTC
CTACCAGTACCTGGGATCCATCACCTCTTCCTCTGTCCACCCAGCGACACCCATTTCACCCGGCCGTGCC
AGCGGCATGACCAGCCTCTCTGCAGAACTTTCCAGTCGACTCTCAACGGCTCCGGACCTGACCGCCTTCG
GCGACCCACGCCAGTTCCCTACTCTGCCGTCCATCTCCGACCCGCGCATGCACTACCCAGGCGCCTTCAC
CTACTCGCCGCCCGTCACGTCGGGCATCGGCATCGGCATGTCAGCCATGAGCTCGGCCTCTCGCTACCAC
ACCTACCTGCCGCCGCCCTACCCCGGCTCATCACAGGCGCAGGCCGGGCCCTTCCAGACCGGCTCGCCCT
CCTACCATCTATACTACGGCGCCTCGGCCGGTTCCTACCAGTTCTCCATGGTGGGCGGAGAGAGATCGCC
CCCGCGCATCCTGCCGCCCTGCACCAACGCATCCACCGGCGCCGCGCTGCTCAACCCCAGCCTCCCCAGC
CAGAGCGACGTGGTGGAGACCGAGGGCAGCCATAGCAACTCGCCCACCAACATGCCCCCCGCGCGCCTGG
AGGAGGCCGTGTGGCGGCCCTACTGA

Translation (451 aa):
MRIPVDASTSRRFTPPSTALSPGKMSEALPLGAPDGGAALASKLRSGDRSMVEVLADHPGELVRTDSPNF
LCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRS
GRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSELEQLRRTAMR
VSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDARQIQPSPPWSYDQSYQYLGSITSSSVHPATPISPGRA
SGMTSLSAELSSRLSTAPDLTAFGDPRQFPTLPSISDPRMHYPGAFTYSPPVTSGIGIGMSAMSSASRYH
TYLPPPYPGSSQAQAGPFQTGSPSYHLYYGASAGSYQFSMVGGERSPPRILPPCTNASTGAALLNPSLPS
QSDVVETEGSHSNSPTNMPPARLEEAVWRPY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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