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Report for CCDS49983.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
49983.1 |
Reviewed, update pending |
Mus musculus |
17 |
Vmn2r106 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:224576](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:49983.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:224576](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 17 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)
Attributes |
Inferred exon combination |
Sequence IDs included in CCDS 49983.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000167464.2 |
ENSMUSP00000126534.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000167464.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000126534.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000167464](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000126534](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001104568.1 |
NP_001098038.1 |
Removed |
not alive |
![Link to Nucleotide Sequence:NM_001104568.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001098038.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001104568](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001098038](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001098038.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001385160.1 |
NP_001372089.1 |
Pending |
alive |
![Link to Nucleotide Sequence:NM_001385160.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001372089.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001385160](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001372089](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001372089.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 49983.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2589 nt): ATGTTGTACTGGACTTTTATTCTCTGGTTCTTACAGATTCCGAAATTTGTCTCTGCCATTATGACTGTGA ATATCAGTAAATGCTATTACAAAACTACTGAAGATTTTCACCATGAAGGAGATGTCATGATTGGTGCATT TTTTCCTATTCATACTTACTACTCTGCAAAGAAAATTCCACATCCATTTCTACCATACTATTATCTAGAT AATCATATACAATATAATTTTAAGAACTACCAGTATATACTTGCTCTGTTATTTGCCATTGAGGAGATCA ATGGGAACCCTAATATTTTACCTAATATATCACTTGGATTTGATTTCTACAATGTCCGATTCACTGAGAA GGACACTCTCATGAATGCTTTTAATTGGTTCACAAATAGAAGGAAGAAAAAGATTTTGCCAAACTACAAC TGTAACAAGAAAAAATTTTCTGCTGCACTCACAGGAACATCTTGGACAACATCTGCCCAAATTAGTACTT TATTTCAACTATTCAAATTTCCACAGCTTTCCTATGGACCTTATGATCCCATCTTGAGTGACCGAAGTCA GTATTTTTCTCTCTACCAGATGGCCCCAAAGTATACATCACTTTCACATGGCATTGTCTCTTTGATGGTT CATTTTAGGTGGTCCTGGGTTGGTCTCATCCTTCCAGATGACCACAAAGGGAATAAAATTCTACCAGAAA TCAAAGAAGACATGCAGAGAAAAGGAGTCTGTATAGCTTTTGTTAAAATGATCCCTGCCACCTGGACTTC ACATTTTAGCAAATTCTGGGAAAATATGGATGAGGTAAATGTCATAATTATATATGGTGACATTGATTCT CTAGAAATTCTAATGAGAAATATTGGACAAAGGTTATTGACATTGAAAGTCTGGGTCTTGAACATTGAAC CACATGTTACTGACTATGCTGATTATTTCTTGTTAGACTCATTCCATGGGAGCTTAATTTTTACTCACCA TTACAGAAAGAATTTTGAGTTCACCAATTTCATTCAAACAGTTAATCCTTACAAATACCCAGAAGATATT TATCTTCCTAAGTTGTGGCATTTGTTCTTCAAGTGCTCATTTTCTGATATTGATTGTCAACTATTGGCTA ACTGTCAAGCCAATGCTTCTTTGGATGTATTGCCTTGTCATATATTTGACATAGCGATTAGTGAAGAGAG CAAGACTATCTATAATGCCGTGTATGCTCTGGCTCATAGTCTTCATGTGATGAGTATTCAACAAATACAA ATACAACCCCATGAAAATGGGGATGTGTTGGTGTTCTCGCCCTGGCAGGTAATAACAATTCTTAACACTT TCTTAAAGGAAATTGATGAGAGAGACAACATGAGTTTAGATTGGAGACAGAAACTAAATGCAGAATATGA CATTCTTAACCTTTGGAATTTACCAAAGGGTCTTGGACTAAAGGTGAAAATAGGATCCTTTTCTGCAAAT ACTGCCCAGCACCAACAGTTGTCTTTGTCTGAAGAGATGATCCAATGGCCAGAAGGATTTTTAGATATCC CCCAGTCTGTGTGCAGTGAGAGTTGTAAGCCCGGATTCAGAAAAATAATCCTGGAGGGCAAGGCGATCTG CTGCTACAATTGCACTCCTTGTGCAGAAGATGAGATTTCTAATGAGACTGATGTGGATCAATGTGTGAAG TGTCCAGAGAGTCATTATTCAAATACAGAGAAGAATCACTGCTTCCAGAAAACTGTGATTTTTCTGGCCT ATGAAGACCCCTTGGGGATGACACTGGCCTGTATAGCTTTGTGCTTATCTGCACTCACAGCCTTTGTTAT TGGCATCTTTGTGAAATACAGAGACACTCCTATTGTCAAGGCCAATAACCGAGCTCTCAGTTACACTTTG CTCATCACCCTCACCTTCTGCTTCCTTTGCTCTTTGAACTTCATTGGTCAACCCAACCTGACCACCTGCA TCCTACAACAGACCACATTTGGAGTTGCATTCACTATGGCTCTTGCCACTGTGTTGGCAAAAGCTATTAC TGTAGTTATTGCATTCAGAGCCACTTTTCCAGGGAGAATGGTGAGGTGGCTAATGATGTCAAGGGTCCCA AACTACATCATTCCTATCTGCACCCTGATCCAACTTCTTCTTTGTGGAATATGGATGGCAATCTCTCCTC CATTCATTGACAATGATGTTCATACTGAACATGGATACATCATCATTTTTTGCAACAAGGGCTCATCTTT TGCTTTCCACTGTGTCCTGGGATACCTCTGCTCCTTGGCATTTGGAGGATATACCATGGCTTTCTTATCT AGAAATCTACCTGGCACATTCAATGAATCAAAATTTCTGTCATTTAGCATGTTGGTGTTCTTCTGTGTCT GGGTCACCTTTCTTTCAGTCTACCACAGCACCAAGGGGAAGTTCATGGTGGCTATGGAAGTCTTCGCTAT CTTAGCTTCCAGTTCAGCCCTCCTTGGATTCATATTTGGTCCTAAGTGTTACATTATCTTGATCAGACCA GACAGGAATTCATTTCATCATATCAGGGACAAAACACATTCTCGAAGGAATAAGACTTATGTAATGTAG
Translation (862 aa): MLYWTFILWFLQIPKFVSAIMTVNISKCYYKTTEDFHHEGDVMIGAFFPIHTYYSAKKIPHPFLPYYYLD NHIQYNFKNYQYILALLFAIEEINGNPNILPNISLGFDFYNVRFTEKDTLMNAFNWFTNRRKKKILPNYN CNKKKFSAALTGTSWTTSAQISTLFQLFKFPQLSYGPYDPILSDRSQYFSLYQMAPKYTSLSHGIVSLMV HFRWSWVGLILPDDHKGNKILPEIKEDMQRKGVCIAFVKMIPATWTSHFSKFWENMDEVNVIIIYGDIDS LEILMRNIGQRLLTLKVWVLNIEPHVTDYADYFLLDSFHGSLIFTHHYRKNFEFTNFIQTVNPYKYPEDI YLPKLWHLFFKCSFSDIDCQLLANCQANASLDVLPCHIFDIAISEESKTIYNAVYALAHSLHVMSIQQIQ IQPHENGDVLVFSPWQVITILNTFLKEIDERDNMSLDWRQKLNAEYDILNLWNLPKGLGLKVKIGSFSAN TAQHQQLSLSEEMIQWPEGFLDIPQSVCSESCKPGFRKIILEGKAICCYNCTPCAEDEISNETDVDQCVK CPESHYSNTEKNHCFQKTVIFLAYEDPLGMTLACIALCLSALTAFVIGIFVKYRDTPIVKANNRALSYTL LITLTFCFLCSLNFIGQPNLTTCILQQTTFGVAFTMALATVLAKAITVVIAFRATFPGRMVRWLMMSRVP NYIIPICTLIQLLLCGIWMAISPPFIDNDVHTEHGYIIIFCNKGSSFAFHCVLGYLCSLAFGGYTMAFLS RNLPGTFNESKFLSFSMLVFFCVWVTFLSVYHSTKGKFMVAMEVFAILASSSALLGFIFGPKCYIILIRP DRNSFHHIRDKTHSRRNKTYVM
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