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Report for CCDS50111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50111.1 Public Mus musculus 17 Glyatl3 23 108 98 CCDS HistoryNCBI Gene:435528Re-query CCDS DB by CCDS ID:50111.1Re-query CCDS DB by GeneID:435528See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 50111.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166343.2 ENSMUSP00000125916.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166343.2Link to Ensembl Protein Viewer:ENSMUSP00000125916.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166343Re-query CCDS DB by Protein ID:ENSMUSP00000125916
Original member NCBI NM_001145060.1 NP_001138532.1 Updated not alive Link to Nucleotide Sequence:NM_001145060.1Link to Protein Sequence:NP_001138532.1Re-query CCDS DB by Nucleotide ID:NM_001145060Re-query CCDS DB by Protein ID:NP_001138532
Current member NCBI NM_001145060.2 NP_001138532.1 Accepted alive Link to Nucleotide Sequence:NM_001145060.2Link to Protein Sequence:NP_001138532.1Re-query CCDS DB by Nucleotide ID:NM_001145060Re-query CCDS DB by Protein ID:NP_001138532Link to BLAST:NP_001138532.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138532.1 290 E9Q5L8 290 100% 0 0

Chromosomal Locations for CCDS 50111.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 40904741 40905167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40910029 40910161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40911049 40911175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40912663 40912770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40914273 40914350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGTTGGTGCTAAAGTGCTCCACCAAATTATTCATACTGGAGAACATGTTGAAGAGTCACTTTCCTGAAT
CACTCAAGGTTTATGGAGCAGTGATGAACATAAATCGTGGAAATCCCTTTCAAAAGGAAGTGGTATTGGA
TTCATGGCCAAACTTCAAAGTTATCATCACCCGGCGAGAGAGAGAGGCTGAGACAGATAACCTTGACCAT
TACACTAATGCATATGCTGTATTCTACAAAGATATCAGAGCTTACCAACAGCTATTGGAAGAACATGATG
TTATTAATTGGGACCAAGTTTTTCAAATACAAGGGTTGCAAAGTGAATTATATGCTGCTTCCAAAGCCGT
TGCCAAAGCAAGGCTGTTAGATTTGGATATAAATTTGGCTTCCTTCAAGGCTGTCCATTTTTCTCCTGTT
TCATCTGTGCCAGACCACAGTTTCCTAACCGGGCCAACCCCGAGACTGACCTACCTGAGTGTCTCAGATG
CAGATCTTCTCAACCGGACTTGGTCACGAGGTGGCAACCAGCAGTGCCTGCGGTACTTGGCCAATCTCAT
CGCCTGCTTTCCCAGCGTGTGTGTGCGTGATGAGAAGGGAAACCCAGTATCCTGGGGTATCACAGATCAG
TTTGCCACTATGTGTCACGGCTACACCCTGCCTGACCATCGCAGGAAAGGTTACAGCCGACTGGTGGCCC
TCACGCTGGCCAGGAAGTTGCAAAGCCGGGGATTCCCTTCCCAGGGAAATGTCCTGGATGACAACCTGGC
TTCCATAAACCTGCTGAAGAGTGTCCAAGCTGAGTTCTTGCCTTGTCGTTTCCACAGGCTTATTCTGACC
CCTGCAGCTTTCTCAAGACAAGCTCACCTTTAG

Translation (290 aa):
MLVLKCSTKLFILENMLKSHFPESLKVYGAVMNINRGNPFQKEVVLDSWPNFKVIITRREREAETDNLDH
YTNAYAVFYKDIRAYQQLLEEHDVINWDQVFQIQGLQSELYAASKAVAKARLLDLDINLASFKAVHFSPV
SSVPDHSFLTGPTPRLTYLSVSDADLLNRTWSRGGNQQCLRYLANLIACFPSVCVRDEKGNPVSWGITDQ
FATMCHGYTLPDHRRKGYSRLVALTLARKLQSRGFPSQGNVLDDNLASINLLKSVQAEFLPCRFHRLILT
PAAFSRQAHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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