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Report for CCDS50220.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50220.1 Public Mus musculus 18 Cables1 23 108 98 CCDS HistoryNCBI Gene:63955Re-query CCDS DB by CCDS ID:50220.1Re-query CCDS DB by GeneID:63955See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50220.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171109.8 ENSMUSP00000129463.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171109.8Link to Ensembl Protein Viewer:ENSMUSP00000129463.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171109Re-query CCDS DB by Protein ID:ENSMUSP00000129463
Original member NCBI NM_001146287.1 NP_001139759.1 Updated not alive Link to Nucleotide Sequence:NM_001146287.1Link to Protein Sequence:NP_001139759.1Re-query CCDS DB by Nucleotide ID:NM_001146287Re-query CCDS DB by Protein ID:NP_001139759
Current member NCBI NM_001146287.2 NP_001139759.1 Accepted alive Link to Nucleotide Sequence:NM_001146287.2Link to Protein Sequence:NP_001139759.1Re-query CCDS DB by Nucleotide ID:NM_001146287Re-query CCDS DB by Protein ID:NP_001139759Link to BLAST:NP_001139759.1

Chromosomal Locations for CCDS 50220.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 11839806 11840533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11882714 11882785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11888737 11888829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11905925 11906002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11923360 11923456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11924815 11924971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11926261 11926364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11939719 11939825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11941180 11941387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11944461 11944601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1785 nt):
ATGGCGGCGGCGACCGCCACCGCGGGCACGGCCGCCTGCAGCAGCAGCAGCAGCAGTCGCGGCGGCAGCA
CGGACGCCGCGGCCACCAGCGGGGTGCAGCCGCCGCCGCCTCCTCCGGCCACCGCGCCGCCGGAACCTCT
TCGTAAGCCGCGCATGGACCCGCGGCGCCGCCAGGCTGCCCTGTCCTTCCTCACCAACATTTCTCTGGAC
GGACGGCCTCCGCTGCAGGACCACGAGTGGGGCGGCGGCGAGGAGGGCGGCGGGACCAAGCCCGGAGCAA
GGGCTCGGCTCAGCCTGCTGGCCGCTGGCTGCAACGCGTTCTCGGCACCGGGCACCGCGGCCGCGCCGTG
GACCGCCGGCTCGGGTTCCAGCCCTTGCCCGCTGCCGCCGTCTCTGGTCCCCCGGGTGTTGGGAGAGCCA
TCTCAGCCGCCCCGTTCAGCTCCAGCTGTCACCGGTGCTCAGCTGCAGTTGCCTGACGGGCCGGGAGGCG
CCGGACAGGAGGAGCTGGAGGAGGACGATGCCTTCACCAACGTGCAGGTGCCATCGGCCAGCTTTTTGGG
CTCCGGGACCCCCGGGAGTACGAGCGGCAGTCGGGGCCGCCTCAACTCGTTCACTCAGGGAATCCTGCCC
ATCGCCTTCTCCAGGCAGAACTCGCAGAACTACTGCGCCTTGGAGCAGTCAGGCCAGGGCGGCAGCACCA
GCGCCTTGGAGCAGCTGCAGAGGTCCAGACGTCGCCTCATCTCCCAGAGATCATCTTTGGAGACCCTGGA
AGATATTGAAGAGAATGCCCCTCTCCGGAGATGTCGAACACTCTCAGGTTCTCCCAGACCAAAGAATTTC
AAGAAAATTCATTTTATCAAGAATATGCGACAGCACGATACCAAGAATGGCAGAATAGTCCTTATCAGTG
GCAGAAGATCCTTCTGTAGTATATTTTCCGTGCTGCCGTATCGAGACAGTACCCAAGTCGGGGACCTGAA
GTTGGATGGAGGGAGGCAGTCAGCAGGGGCCATGAGCCTGAAGGAGATCATTGGCCTTGAAGGTGTGGAA
CTGGGTGCCGATGGGAAGACAGTGTCTTATACCCAGTTTCTACTACCCACAAATGCCTTTGGGAACCGTA
GAAATACCATAGACTCCACCGCCTCCTTCTCCCAGTTTCGGAGCCTGAGCCACCGAAGCCTCTCCATGGG
CCGGGCTGGCAGCACCCAGGGGAGCCTTGATGCAGGAAGTGACCTGGGAGACTTTATGGACTATGACCCA
AACCTCCTGGATGACCCCCAGTGGCCTTGCGGCAAGCACAAGCGAGTTCTGACCTTCCCTTCATACATGA
CCACAGTGATTGACTACGTGAAGCCCTCAGATCTCAAGAAGGACATGAATGAAACCTTCAAGGAGAAGTT
TCCTCACATTAAATTAACACTCAGCAAAATCAGGAGCCTGAAAAGAGAGATGCGGAAGCTTGCCCAGGAG
GACTGTGGCTTTGAGGAGCCCACGGTGGCCATGGCCTTTGTCTACTTTGAGAAGCTGGCCCTCAGGGGGA
AGCTGAACAAGCAGAACCGGAAGCTCTGTGCGGGAGCCTGTGTGCTGCTAGCGGCCAAGGTCGGAAGTGA
CCTCAGAAAGCACGAGGTCAAGCACCTGATTGACAAACTGGAAGAGAAGTTCCGACTGAACAGACGAGAA
CTGATTGCCTTTGAATTCCCAGTGTTAGTGGCCTTGGAGTTTGCACTTCACCTGCCAGAGCACGAAGTCA
TGCCCCACTATAGACGCCTGATCCAGAGCTCCTAG

Translation (594 aa):
MAAATATAGTAACSSSSSSRGGSTDAAATSGVQPPPPPPATAPPEPLRKPRMDPRRRQAALSFLTNISLD
GRPPLQDHEWGGGEEGGGTKPGARARLSLLAAGCNAFSAPGTAAAPWTAGSGSSPCPLPPSLVPRVLGEP
SQPPRSAPAVTGAQLQLPDGPGGAGQEELEEDDAFTNVQVPSASFLGSGTPGSTSGSRGRLNSFTQGILP
IAFSRQNSQNYCALEQSGQGGSTSALEQLQRSRRRLISQRSSLETLEDIEENAPLRRCRTLSGSPRPKNF
KKIHFIKNMRQHDTKNGRIVLISGRRSFCSIFSVLPYRDSTQVGDLKLDGGRQSAGAMSLKEIIGLEGVE
LGADGKTVSYTQFLLPTNAFGNRRNTIDSTASFSQFRSLSHRSLSMGRAGSTQGSLDAGSDLGDFMDYDP
NLLDDPQWPCGKHKRVLTFPSYMTTVIDYVKPSDLKKDMNETFKEKFPHIKLTLSKIRSLKREMRKLAQE
DCGFEEPTVAMAFVYFEKLALRGKLNKQNRKLCAGACVLLAAKVGSDLRKHEVKHLIDKLEEKFRLNRRE
LIAFEFPVLVALEFALHLPEHEVMPHYRRLIQSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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