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Report for CCDS50228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50228.1 Public Mus musculus 18 Kctd1 23 108 98 CCDS HistoryNCBI Gene:106931Re-query CCDS DB by CCDS ID:50228.1Re-query CCDS DB by GeneID:106931See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50228.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168989.8 ENSMUSP00000128070.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168989.8Link to Ensembl Protein Viewer:ENSMUSP00000128070.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168989Re-query CCDS DB by Protein ID:ENSMUSP00000128070
Original member Current member NCBI NM_001142731.1 NP_001136203.1 Accepted alive Link to Nucleotide Sequence:NM_001142731.1Link to Protein Sequence:NP_001136203.1Re-query CCDS DB by Nucleotide ID:NM_001142731Re-query CCDS DB by Protein ID:NP_001136203Link to BLAST:NP_001136203.1

Chromosomal Locations for CCDS 50228.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 14969537 14969695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14973980 14974285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14986336 14986480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 15007696 15007874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 15061768 15063564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2586 nt):
ATGGCGAGAATGCCTGGCAGCGGGGACTGTAACACCAGCGCGGGCGGCAGCGCCGCTGCTGCGGCCGAGA
ACAATGGGGATCGGGGTGAGGGTGAGCGCGGGGCCGGGGGCCGCGGCCGCCGCTACGGCCGCCCGCATTA
CTGCAGCGCGGGCGAGGAGGAGGAGGAGGAAGAGGAGGAGGACGAGATCCAGGAGGTGCAGATAACGGGG
GACGAGGAGGAGGACGGAGGTGGGGGGCTGGAGGAGGACGAGGAGGAGGAGGAAGAGGAGGAGATGGGGA
TGGACTGGGAAGAGCCCCTGGAGCCGGAGGACTCGGCCGGGGAGGAGCTGGAGCCGGAGCCGGTCCATAT
GATCCATATGGACCAGAGCGCCGCGCTGGAGCCCGAGGCGCCGCCACGACTGTTGGCGCCCCGGGCCCGC
GCGGGGCCGCCGGGGGACAGCGCGGAGCTGGACCCCGACGTGCTGCAGCGCCCCGAGCGGGCCCGGCTGA
GCGAGAACACCAGGCTGGCCACCCGCTACGCCGTGCGCATCTTCCGGGAGTACCTGAGCGAAAAGGCTCA
GAGCCCGGACTTCGAGACCATGGACAAGGGGGCGCTGTGCCGCGTGCTGCGCTCCTTCTATGCCGAGGCC
CGTTCTAAGAGCGGCCAGCTCTACAGCAAGTCCTCGCTCATCAGTATCCGCAGCTCCCTCAACCGCTACC
TCAACGAGCCCCCTTACTGTCGCACGCTCGACCTCACCAAGGACCCCGAGCTGCGCAGCGCCAACCTGAC
GCTGGCCGCAGTCATCCGCAAGCTCGAGGAGCAGGGCGCGGGGCCCGTGGTGCAGAAGCAAGCCATCACG
CGCGCCGACCTGCGCAAGCTCTACACCTCCAGCGTCTTCAGCACCAACACGCCCTTTGGGCTGCTCAACA
AGGTCTGGTTCGAGACGTGCATGTACTTCTGCACGCGAGGCCGTGAGAACCAGCGCGAGCTGGAGGAGGA
CTCCTTCGGGCTGGCCATGGACGAGGACGGTCGCAAGTTCGTTTACTTCAAGTCGCTTGGGCCTTACCAT
AAGTCGCGTTCCTCGTCCTGGAGTAAGAAGCGTGCGGAGAGCAGCGACGAAGAGAACTTGCCTCGCATGT
ACGAGACGGGCACTGAGTTCTGTCCCTACGCCAGCTTTGTCAAGTACCTGTCTAAGCGCAATCCCCTCTG
TAAGGCGTTTTTCCAGCGGCCCCGGGACCACTGCAGTGAGGGCGATGTGACATGGTACGAGAACAAAGCC
ATAGGCAAGAACTTGCTGGGCACCAGGATGCAGATGCTGTCCAAGGCAGCCAAGCTGTCCAAGACCTACA
CTAACCATTGCATCGGCGCGGTGTCCATCGCCACACTCAACAGCATCGCGGGTATCGGGACCAAGCTAGG
CTCCCCAGCCCCGCAGGGCTGCTATACCGACTCTCTGAACGGGTCAGCTCGTCACCACTCCCACCACGCT
CCCACCCATCCTTCCCACCACCACCGCCCCCAGCCGCCCTCGCTGGGTAACACTTATATCCTCCCCAAAG
ACAGCCAGGTCGGGCCCGACGTGAAGTCCGAGGCGGCGCCCAAGCGCACGCTGTACGAGTCAGTGTTCGG
GTCAGGGGAAATCTGCGGCCCTTCTTCCCCCAAAAGACTTTGTATCCGTCCCTCCTCGGAACCTGTGGAT
GCGGTGGTGGTGGTTTCCGTGAAACACGACCCCCTGCCTCTTCTTCCAGAAGTCAATGGGCACCGAAGCA
CCAATTCTCCCACCATAGTTTCACCTGCTATTGTTTCCCCCGCCCAGGACAGTCGGCCCAATATGTCAAG
ACCTCTGATCACTCGATCCCCTGCATCGCCACTGAACAACCAAGGCATTCCAACTCCAGCTCAGCTCACC
AAATCCAACGCACCCGTCCACATCGACGTGGGCGGCCACATGTACACCAGCAGCCTGGCCACCCTCACCA
AATACCCCGAATCCAGAATCGGAAGACTCTTTGATGGTACAGAGCCCATTGTTCTGGACAGTCTCAAACA
GCACTATTTCATTGACAGAGACGGGCAGATGTTCAGATATATCTTGAATTTTCTACGAACATCAAAACTC
CTCATTCCTGATGATTTCAAGGACTATACTTTGTTATATGAAGAGGCAAAATACTTTCAACTTCAGCCAA
TGTTGTTGGAGATGGAGCGATGGAAACAGGACAGGGAAACTGGCCGCTTTTCACGGCCCTGCGAGTGCCT
CGTGGTGCGTGTGGCCCCGGACCTTGGAGAAAGGATCACCCTCAGTGGGGACAAGTCCTTGATAGAGGAA
GTATTTCCCGAGATCGGCGATGTGATGTGCAACTCGGTCAATGCAGGCTGGAATCACGACTCAACACATG
TCATCAGGTTTCCACTAAACGGCTACTGCCACCTCAATTCAGTTCAGGTCCTTGAGCGGTTGCAGCAAAG
AGGATTTGAAATTGTGGGTTCCTGTGGAGGAGGAGTGGACTCGTCCCAGTTCAGTGAATATGTCCTCCGA
CGGGAACTGAGGCGGACACCCCGAGTACCCTCAGTCATCCGGATAAAACAGGAGCCACTGGACTAA

Translation (861 aa):
MARMPGSGDCNTSAGGSAAAAAENNGDRGEGERGAGGRGRRYGRPHYCSAGEEEEEEEEEDEIQEVQITG
DEEEDGGGGLEEDEEEEEEEEMGMDWEEPLEPEDSAGEELEPEPVHMIHMDQSAALEPEAPPRLLAPRAR
AGPPGDSAELDPDVLQRPERARLSENTRLATRYAVRIFREYLSEKAQSPDFETMDKGALCRVLRSFYAEA
RSKSGQLYSKSSLISIRSSLNRYLNEPPYCRTLDLTKDPELRSANLTLAAVIRKLEEQGAGPVVQKQAIT
RADLRKLYTSSVFSTNTPFGLLNKVWFETCMYFCTRGRENQRELEEDSFGLAMDEDGRKFVYFKSLGPYH
KSRSSSWSKKRAESSDEENLPRMYETGTEFCPYASFVKYLSKRNPLCKAFFQRPRDHCSEGDVTWYENKA
IGKNLLGTRMQMLSKAAKLSKTYTNHCIGAVSIATLNSIAGIGTKLGSPAPQGCYTDSLNGSARHHSHHA
PTHPSHHHRPQPPSLGNTYILPKDSQVGPDVKSEAAPKRTLYESVFGSGEICGPSSPKRLCIRPSSEPVD
AVVVVSVKHDPLPLLPEVNGHRSTNSPTIVSPAIVSPAQDSRPNMSRPLITRSPASPLNNQGIPTPAQLT
KSNAPVHIDVGGHMYTSSLATLTKYPESRIGRLFDGTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKL
LIPDDFKDYTLLYEEAKYFQLQPMLLEMERWKQDRETGRFSRPCECLVVRVAPDLGERITLSGDKSLIEE
VFPEIGDVMCNSVNAGWNHDSTHVIRFPLNGYCHLNSVQVLERLQQRGFEIVGSCGGGVDSSQFSEYVLR
RELRRTPRVPSVIRIKQEPLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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