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Report for CCDS50292.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50292.1 Public Mus musculus 18 Phax 23 108 98 CCDS HistoryNCBI Gene:56698Re-query CCDS DB by CCDS ID:50292.1Re-query CCDS DB by GeneID:56698See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50292.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000130163.7 ENSMUSP00000122948.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130163.7Link to Ensembl Protein Viewer:ENSMUSP00000122948.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000130163Re-query CCDS DB by Protein ID:ENSMUSP00000122948
Original member Current member NCBI NM_001162989.1 NP_001156461.1 Accepted alive Link to Nucleotide Sequence:NM_001162989.1Link to Protein Sequence:NP_001156461.1Re-query CCDS DB by Nucleotide ID:NM_001162989Re-query CCDS DB by Protein ID:NP_001156461Link to BLAST:NP_001156461.1

Chromosomal Locations for CCDS 50292.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 56562694 56562723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56575462 56576048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56580180 56580300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56584291 56584374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56586877 56587146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1092 nt):
ATGACGTCACTGACCCCCGTTGTAGCCCAGAAAGTCCTAGGTGGGGGCAGCGCTGCGTGCGCACCGGTGT
CACATTATCGGACTGTTAAACATGTGGACTCCAGCGAGGAGAGTCTAGATTCCGATGACGATTGCTCTCT
TTGGAAACGCAAGCGACAGAAGTGTCATAATACTCCTCCCAAGCCAGAGCCTTTCCCATTTGGACCAAGT
GGTCAGAAAACGGCTCTCAACGGAGGAAAGAAGGTGAACAACATCTGGGGCGCGGTGCTCCAGGAACAGA
ATCAAGATGCGGTGGCCACTGAACTCGGCATCTTGGGAATGGAAGGCTCCATTGACAGAAGCAGGCAGTC
TGAGACCTATAACTATTTGCTTGCTAAGAAACTTGCTAAGAAGGAATCTCAAGAGTACACAAAGGAATTA
GACAAAGATCTAGATGAATATATGCATGGTGACAAAAAACCAGGGTCAAAGGAAGACGAGAATGGGCAAG
GTCACCTCAAGCGGAAACGACCTGTCAGAGACAGACTGGGTAACAGAGTGGAAATGAACTACAAAGGGCG
CTATGAGATCACAGAAGAGGATGCTCCCGAGAAAGTAGCCGATGAGATCGCCTTCAGGTTGCAGGAACCC
AAGAAGGACCTGATAGCCCGAGTAGTGAGGATACTTGGGAACAAAAAGGCCATTGAACTTCTGATGGAAA
CAGCTGAAGTCGAGCAAAATGGTGGTCTTTTCATAATGAATGGTAGCCGAAGAAGAACACCCGGTGGAGT
CTTTCTGAATCTCCTGAAGAACACACCCAGCATCAGCGAGGAACAGATTAAGGACATTTTCTACGTTGAA
AATCAAAAGGAATATGAAAATAAAAAAGCTGCTAGAAAAAGAAGAACACAGCTTTTGGGGAAGAAAATGA
AACAAGCTATTAAAAGTCTGAACTTCCAGGAGGACGATGACACATCTCGAGAAACGTTTGCAAGTGACAC
TAATGAGGCCCTGGCCTCTCTCGACGAAGCCCAGGAAGGACCTGGCGAGACCAAGCTGGATGCTGAGGAG
GCCATTGAGGTGGACCACCCTCAGGACTTGGACATCTTCTGA

Translation (363 aa):
MTSLTPVVAQKVLGGGSAACAPVSHYRTVKHVDSSEESLDSDDDCSLWKRKRQKCHNTPPKPEPFPFGPS
GQKTALNGGKKVNNIWGAVLQEQNQDAVATELGILGMEGSIDRSRQSETYNYLLAKKLAKKESQEYTKEL
DKDLDEYMHGDKKPGSKEDENGQGHLKRKRPVRDRLGNRVEMNYKGRYEITEEDAPEKVADEIAFRLQEP
KKDLIARVVRILGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSISEEQIKDIFYVE
NQKEYENKKAARKRRTQLLGKKMKQAIKSLNFQEDDDTSRETFASDTNEALASLDEAQEGPGETKLDAEE
AIEVDHPQDLDIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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