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Report for CCDS50311.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50311.1 Public Mus musculus 18 Ptpn2 23 108 98 CCDS HistoryNCBI Gene:19255Re-query CCDS DB by CCDS ID:50311.1Re-query CCDS DB by GeneID:19255See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50311.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122412.1 ENSMUSP00000112675.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122412.1Link to Ensembl Protein Viewer:ENSMUSP00000112675.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122412Re-query CCDS DB by Protein ID:ENSMUSP00000112675
Original member Current member NCBI NM_001127177.1 NP_001120649.1 Accepted alive Link to Nucleotide Sequence:NM_001127177.1Link to Protein Sequence:NP_001120649.1Re-query CCDS DB by Nucleotide ID:NM_001127177Re-query CCDS DB by Protein ID:NP_001120649Link to BLAST:NP_001120649.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120649.1 406 Q06180-1 406 100% 0 0

Chromosomal Locations for CCDS 50311.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 67672573 67672768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67675720 67675886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67677710 67677862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67680840 67681049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67681443 67681577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67688891 67688989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67695624 67695724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67711837 67711927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67724442 67724510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGTCGGCAACCATCGAGCGGGAGTTCGAGGAACTGGATGCTCAGTGTCGCTGGCAGCCGTTATACTTGG
AAATTCGAAATGAATCCCATGACTATCCTCATAGAGTGGCCAAGTTTCCAGAAAACAGAAACCGAAACAG
ATACAGAGATGTAAGCCCATATGATCACAGTCGTGTTAAACTGCAAAGTACTGAAAATGATTATATTAAT
GCCAGCTTAGTTGACATAGAAGAGGCACAAAGAAGTTACATCTTAACACAGGGCCCACTTCCGAACACAT
GCTGCCATTTCTGGCTCATGGTGTGGCAGCAAAAGACCAAAGCAGTTGTCATGCTAAACCGAACTGTAGA
AAAAGAATCGGTTAAATGTGCACAGTACTGGCCAACGGATGACAGAGAAATGGTGTTTAAGGAAACGGGA
TTCAGTGTGAAGCTCTTATCTGAAGATGTAAAATCATATTATACAGTACATCTACTACAGTTAGAAAATA
TCAATACTGGTGAAACCAGAACCATATCTCACTTCCATTATACCACCTGGCCAGATTTTGGGGTTCCAGA
GTCACCAGCTTCATTTCTAAACTTCTTGTTTAAAGTTAGAGAATCTGGTTGTTTGACCCCTGACCATGGA
CCTGCAGTGATCCATTGCAGTGCGGGCATCGGGCGCTCTGGCACCTTCTCTCTTGTAGATACCTGTCTTG
TTCTGATGGAAAAAGGAGAGGATGTTAATGTGAAACAATTATTACTGAATATGAGAAAGTATCGAATGGG
ACTTATTCAGACACCGGACCAACTCAGATTCTCCTACATGGCCATAATAGAAGGAGCAAAGTACACAAAA
GGAGATTCAAATATACAGAAACGGTGGAAAGAACTTTCTAAAGAAGATTTATCTCCTATTTGTGATCATT
CACAGAACAGAGTGATGGTTGAGAAGTACAATGGGAAGAGAATAGGTTCAGAAGATGAAAAGTTAACAGG
GCTTCCTTCTAAGGTGCAGGATACTGTGGAGGAGAGCAGTGAGAGCATTCTACGGAAACGTATTCGAGAG
GATAGAAAGGCTACGACGGCTCAGAAGGTGCAGCAGATGAAACAGAGGCTAAATGAAACTGAACGAAAAA
GAAAAAGGTGGTTATATTGGCAACCTATTCTCACTAAGATGGGGTTTGTGTCAGTCATTTTGGTTGGCGC
TTTGGTTGGCTGGACACTGCTTTTTCACTAA

Translation (406 aa):
MSATIEREFEELDAQCRWQPLYLEIRNESHDYPHRVAKFPENRNRNRYRDVSPYDHSRVKLQSTENDYIN
ASLVDIEEAQRSYILTQGPLPNTCCHFWLMVWQQKTKAVVMLNRTVEKESVKCAQYWPTDDREMVFKETG
FSVKLLSEDVKSYYTVHLLQLENINTGETRTISHFHYTTWPDFGVPESPASFLNFLFKVRESGCLTPDHG
PAVIHCSAGIGRSGTFSLVDTCLVLMEKGEDVNVKQLLLNMRKYRMGLIQTPDQLRFSYMAIIEGAKYTK
GDSNIQKRWKELSKEDLSPICDHSQNRVMVEKYNGKRIGSEDEKLTGLPSKVQDTVEESSESILRKRIRE
DRKATTAQKVQQMKQRLNETERKRKRWLYWQPILTKMGFVSVILVGALVGWTLLFH


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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