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Report for CCDS50369.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50369.1 Public Mus musculus 19 Sf1 23 108 98 CCDS HistoryNCBI Gene:22668Re-query CCDS DB by CCDS ID:50369.1Re-query CCDS DB by GeneID:22668See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50369.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113487.7 ENSMUSP00000109115.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113487.7Link to Ensembl Protein Viewer:ENSMUSP00000109115.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113487Re-query CCDS DB by Protein ID:ENSMUSP00000109115
Original member NCBI NM_011750.2 NP_035880.2 Updated not alive Link to Nucleotide Sequence:NM_011750.2Link to Protein Sequence:NP_035880.2Re-query CCDS DB by Nucleotide ID:NM_011750Re-query CCDS DB by Protein ID:NP_035880
Current member NCBI NM_011750.3 NP_035880.2 Accepted alive Link to Nucleotide Sequence:NM_011750.3Link to Protein Sequence:NP_035880.2Re-query CCDS DB by Nucleotide ID:NM_011750Re-query CCDS DB by Protein ID:NP_035880Link to BLAST:NP_035880.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035880.2 548 Q64213-2 548 99.8175% 0 1

Chromosomal Locations for CCDS 50369.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6364088 6364118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6365664 6365792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6368364 6368439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6371267 6371419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6371618 6371707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6372025 6372208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6372301 6372416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6372518 6372625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6373573 6373753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6374010 6374283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6374549 6374608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6374719 6374898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6376296 6376360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1647 nt):
ATGGCGACCGGAGCGAACGCCACGCCGCTGGACTTCCCAAGTAAGAAGAGGAAGAGGAGCCGATGGAACC
AAGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCCCCTGGACTGACTCGGGA
ACAGGAAAGAGCTTACATAGTGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTG
GGCATCCCCCCTAACCCTGAGGACAGGTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGC
TTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGT
TGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAAGCCTCCAGCAACACGTGTGAGCGATAAAGTA
ATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAGAGGGAACACCC
TGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAA
AGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAAT
ACGATGGAGAATGTCAAAAAGGCAGTAGAACAGATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAG
AGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGA
TGATAATAGGATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACC
AAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAGGCCTGGCGACCCTCAGTCAGCTC
AGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGC
ATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCC
AGCAACCCACCACCACCGTCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTT
CAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTT
CCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCA
CCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCC
CTCCTCCAATGGATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAA
AGGTATGATGCCGCCGCCGCCTATGGGCATGATGCCGCCGCCTCCGCCACCTCCCAGTGGGCAGCCCCCG
CCTCCTCCCTCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCGCCCA
GCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAAGATCCCTCCCCGCGGCAGCGATGGCCCG
AGCCATGAGAGTGAGGACTTTCCGCGCCCATTGGTGA

Translation (548 aa):
MATGANATPLDFPSKKRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIVQLQIEDLTRKLRTGDL
GIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHTLITEMVALNPDFKPPADYKPPATRVSDKV
MIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTAN
TMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDNRILRPWQSSETRSITNTTVCT
KCGGAGHIASDCKFQRPGDPQSAQDKARMDKEYLSLMAELGEAPVPASVGSTSGPATTPLASAPRPAAPA
SNPPPPSLMSTTQSRPPWMNSGPSENRPYHGMHGGGPGGPGGGPHSFPHPLPSLTGGHGGHPMQHNPNGP
PPPWMQPPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQPP
PPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQRSLPAAAMARAMRVRTFRAHW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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