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Report for CCDS50404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50404.1 Public Mus musculus 19 Trpm3 23 108 98 CCDS HistoryNCBI Gene:226025Re-query CCDS DB by CCDS ID:50404.1Re-query CCDS DB by GeneID:226025See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50404.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099566.4 ENSMUSP00000097162.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099566.4Link to Ensembl Protein Viewer:ENSMUSP00000097162.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099566Re-query CCDS DB by Protein ID:ENSMUSP00000097162
Original member Current member NCBI NM_001035245.2 NP_001030322.1 Accepted alive Link to Nucleotide Sequence:NM_001035245.2Link to Protein Sequence:NP_001030322.1Re-query CCDS DB by Nucleotide ID:NM_001035245Re-query CCDS DB by Protein ID:NP_001030322Link to BLAST:NP_001030322.1

Chromosomal Locations for CCDS 50404.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 22698931 22698933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22711712 22711925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22715229 22715353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22733000 22733171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22766634 22766808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22771958 22771973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (705 nt):
ATGTATGTCCGAGTATCTTTTGATACGAAACCTGATCTCTTGCTACACCTGATGACCAAGGAATGGCAAC
TGGAGCTTCCCAAACTTCTCATCTCCGTGCACGGAGGGCTGCAGAACTTTGAACTCCAGCCCAAACTCAA
GCAAGTCTTCGGGAAGGGGCTCATCAAAGCAGCCATGACAACTGGAGCCTGGATCTTCACTGGAGGGGTC
AACACAGGTGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATAT
GTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGATGTAGTCCG
ACCATACCAGACCATGTCCAATCCTATGAGCAAGCTCACCGTTCTCAATAGCATGCACTCCCACTTCATC
CTGGCTGACAATGGGACCACGGGGAAATACGGAGCAGAGGTGAAACTCCGCAGACAACTGGAAAAGCACA
TTTCACTCCAGAAGATAAACACAAGAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGG
ACCCAATGTGATCTCAATTGTTTTGGAATACCTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGAT
GGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGGGATTTATTTTC
TATAA

Translation (234 aa):
MYVRVSFDTKPDLLLHLMTKEWQLELPKLLISVHGGLQNFELQPKLKQVFGKGLIKAAMTTGAWIFTGGV
NTGVIRHVGDALKDHASKSRGKICTIGIAPWGIVENQEDLIGRDVVRPYQTMSNPMSKLTVLNSMHSHFI
LADNGTTGKYGAEVKLRRQLEKHISLQKINTRIGQGVPVVALIVEGGPNVISIVLEYLRDTPPVPVVVCD
GSGRASDILAFGHKYSEEGGIYFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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