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Report for CCDS50477.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
50477.1 |
Public |
Mus musculus |
19 |
Afap1l2 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:226250](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:50477.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:226250](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 19 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 50477.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000111584.8 |
ENSMUSP00000107210.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000111584.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000107210.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000111584](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000107210](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001177796.1 |
NP_001171267.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001177796.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001171267.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001177796](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001171267](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001171267.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001171267.1 |
843 |
Q5DTU0-2 |
843 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 50477.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2532 nt): ATGGAGCGCTACAAAGCACAGGGCTGTTGCTGTCTGGTGGTGCAGAGAAGAATCCTGCAGGTCTCTGCTT CCCTGGAGCAGCTGCTGACAGAGCTGGACGACTTCCTTAAGGTCCTCGACCAGGAGAACCTGAGCAGTGC AGCCGTGCTGAAGAAGAGCGGCCTGTCAGAGCTCCTGCGGCTTTACACCAAGAGCAGCAGTTCTGATGAG GAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAGTTCCCG AGGAGCAGGGTCCACTGACCAATGGGGAGCCCAGCCAGCATTCCTCAGCCCCTCAGAAGAGCCTTCCAGA CCTCCCTCCGCCCAAGATGATTCCAGAGAGGAAACAGCCCACCGTTCCAAAGATCGAGTCCCCTGAGGGC TACTATGAAGAGGCTGAGCCATTTGACAGATCCATCAATGAGGATGGAGAGGCTGTGAGCAGCTCCTACG AGTCCTACGATGAGGACGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCGCCCGAGGCCAG CATTGAGCTGATGCGTGATGCCCGCATCTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCCAGTGGGCC AAGCAGCTCTGTGTGATCAGGGACACCAGGCTCTTGTGCTACAAATCGTCCAAAGACCACAGTCCTCAGC TGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCT CAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGG CTTCGGGTCATCCAGGAGGTGAGTGGCCTGCCTTCTGAAGGAGCCTCAGAGGGAAACCAGTACACACCAG ATGCCCAGCGCCTCAACTGTCAGAAACCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGAT CACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATGTCAAGAAGAAATGCTCTGCTGGCCTCAAG CTGAGCAACCTTATGAACCTGGGCAGGAAGAAATCTACCTCGCTGGAGCCCCCGGAGAGATCCCTTGAGA CATCCAGCTACCTGAATGTGCTGGTGAACAGTCAATGGAAGTCACGCTGGTGCTTCGTTAGAGACAGCCA CCTGCACTTCTACCAGGACCGGAACCGGAGCAAGGTGGCCCAGCAGCCCCTCAGCCTGGTGGGCTGTGAC GTGCTTCCAGATCCTAGCCCCGACCACCTGTATTCCTTCCGTATTCTCCACAACGGCGAGGAGCTAGCCA AGCTTGAGGCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAA GACTGACCCGGAAGAGCTCACCTACGACTATGTGGATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCC AAAACCTCTCTCTTACTGATGCAGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCC GGGATTGCCAGGACGATCTGTATGATGATGTGGAGGTATCAGAGCTGATAGCCGTGGTGGAGCCTGCCGA GGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCG GTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGG ACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTC TCCAGGAGACCCAGAGGTGCAGCAGAGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACC CCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACA CCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAGAGAT CAAACTTGGGAAGAATCGGACAGAGGCGGAAGTAAAGCGGTACACGGAGGAGAAGGAGAGGCTGGAGAGG AGCAAGGAGGAGATCCGAGGGCACCTGGCTCAGCTCCGCAGAGAGAAGCGGGAGCTCAAAGAGACCCTGT TGAGATGCACAGATAAGGGGGTCCTGGCCAAGCTGGAGCAGACACTGAAGAAAATAGACGAGGAATGCCG GATGGAGGAGAGCAGGCGTGTGGACCTTGAGCTCAGCATCATGGAGGTGAAGGACAACCTGAAGAAGGCA GAGGCTGGGCCCGTGACCCTGGGCACCACTGTGGATACCACGCACCTGGACAACATGAGCCCTCGTCCAC AGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAA CAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAGGAATGGGAGAAGAAA GGAGCCAGTTAG
Translation (843 aa): MERYKAQGCCCLVVQRRILQVSASLEQLLTELDDFLKVLDQENLSSAAVLKKSGLSELLRLYTKSSSSDE EYIYMNKVSVNGEQNSASPDKVPEEQGPLTNGEPSQHSSAPQKSLPDLPPPKMIPERKQPTVPKIESPEG YYEEAEPFDRSINEDGEAVSSSYESYDEDENSKGKAAPYQWPSPEASIELMRDARICAFLWRKKWLGQWA KQLCVIRDTRLLCYKSSKDHSPQLDVNLRGSSVVHKEKQVRKKGHKLKITPMNADVIVLGLQSKDQAEQW LRVIQEVSGLPSEGASEGNQYTPDAQRLNCQKPDIAEKYLSAAEYGITINGHPEIPETKDVKKKCSAGLK LSNLMNLGRKKSTSLEPPERSLETSSYLNVLVNSQWKSRWCFVRDSHLHFYQDRNRSKVAQQPLSLVGCD VLPDPSPDHLYSFRILHNGEELAKLEAKSSEEMGHWLGLLLSESGSKTDPEELTYDYVDAERVSCIVSAA KTSLLLMQRKFSEPNTYIDGLPSRDCQDDLYDDVEVSELIAVVEPAEEAAPAVDANSGSEPDRVYLDLTP VKSFLHSSSEAQAQASLPAVPHQDDVAETLTVDPKPGTTPEEPHTESPGDPEVQQRQPEVQESSEPIEPT PRITMVKLQAEQQRISFPANCPDTMASAPIAASPPVKEKLRVTSAEIKLGKNRTEAEVKRYTEEKERLER SKEEIRGHLAQLRREKRELKETLLRCTDKGVLAKLEQTLKKIDEECRMEESRRVDLELSIMEVKDNLKKA EAGPVTLGTTVDTTHLDNMSPRPQPKAATPNPPPDSTPVNSASVLKNRPLSVMVTGKGTVLQKAKEWEKK GAS
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