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Report for CCDS50483.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50483.1 Public Mus musculus 19 Cacul1 23 108 98 CCDS HistoryNCBI Gene:78832Re-query CCDS DB by CCDS ID:50483.1Re-query CCDS DB by GeneID:78832See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50483.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111460.4 ENSMUSP00000107086.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111460.4Link to Ensembl Protein Viewer:ENSMUSP00000107086.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111460Re-query CCDS DB by Protein ID:ENSMUSP00000107086
Original member NCBI NM_001172097.1 NP_001165568.1 Updated not alive Link to Nucleotide Sequence:NM_001172097.1Link to Protein Sequence:NP_001165568.1Re-query CCDS DB by Nucleotide ID:NM_001172097Re-query CCDS DB by Protein ID:NP_001165568
Current member NCBI NM_001172097.2 NP_001165568.1 Accepted alive Link to Nucleotide Sequence:NM_001172097.2Link to Protein Sequence:NP_001165568.1Re-query CCDS DB by Nucleotide ID:NM_001172097Re-query CCDS DB by Protein ID:NP_001165568Link to BLAST:NP_001165568.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165568.1 304 Q8R0X2-2 304 100% 0 0

Chromosomal Locations for CCDS 50483.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 60529037 60529087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60529465 60529508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60543010 60543112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60545446 60545541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60563162 60563264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60564168 60564294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60580328 60580718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGGAGGAGAGCATGGAGGAGGAGGAAATGCTCACCTACGAGGCAATGATGGACGACCAGAATCACAACA
ACTGGGAGGCCGCCGCGGACAGTTTCCGCCAGCCTCCGCCGGCCCCGCCGCTGCCCCCGCCGCCGCCGCC
GCGGCCCTCGTCGTCCATCCCGGATCCAGGCCGAGAACTCCCGGGGGGACAGCTGCTGGCTGTGCACGCG
GGCTCCATGGAGAGGAAGGGTCCTAAGGAAGGGCTCCCGATGGGGCCTCCGCCCTTGCCGGAACCAAACG
GGGTGATCATGATGTTGAAGAGCTGCGACGCAGCCGCCGCGGTGGCCAAGACGGCCCCTGCCCCCACCTC
CAGCTCCACTATCAACATCAACACCTCCACCTCCAAGTTCCTAATGAATGTTATAACAATTGAAGATTAT
AAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATA
TACCTATATCCTATGAACAGATTTACAGTTGTGTGTATAAGTGTGTGTGCCAGCAGCACTCAGAACAGAT
GTACAGTGATCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAGCTGCAGGCCAGCCCT
CCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGC
CTCTTTTCATATATATGAATAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGACCTTAT
AAAACTGTTTACGGAACATGTTGCAGAGAAGCACATTTACAGCCTAATGCAGGTGATCAGTCCCGGAAGA
GAGCTGGAGATGAGTTGGCTTATAACAGTCCATCTGCTTGTGCAAGTTCCAGGGGGTATAGATAGTGACG
GTTGA

Translation (304 aa):
MEESMEEEEMLTYEAMMDDQNHNNWEAAADSFRQPPPAPPLPPPPPPRPSSSIPDPGRELPGGQLLAVHA
GSMERKGPKEGLPMGPPPLPEPNGVIMMLKSCDAAAAVAKTAPAPTSSSTININTSTSKFLMNVITIEDY
KSTYWPKLDGAIDQLLTQSPGDYIPISYEQIYSCVYKCVCQQHSEQMYSDLIKKITSHLERVSKELQASP
PDLYIERFNIALGQYMGALQSIVPLFIYMNKFYIETKLNRDLKDDLIKLFTEHVAEKHIYSLMQVISPGR
ELEMSWLITVHLLVQVPGGIDSDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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