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Report for CCDS50505.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50505.1 Public Mus musculus 2 Hacd1 23 108 98 CCDS HistoryNCBI Gene:30963Re-query CCDS DB by CCDS ID:50505.1Re-query CCDS DB by GeneID:30963See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50505.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074854.8 ENSMUSP00000074397.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074854.8Link to Ensembl Protein Viewer:ENSMUSP00000074397.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000074854Re-query CCDS DB by Protein ID:ENSMUSP00000074397
Original member Current member EBI ENSMUST00000114753.7 ENSMUSP00000110401.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114753.7Link to Ensembl Protein Viewer:ENSMUSP00000110401.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114753Re-query CCDS DB by Protein ID:ENSMUSP00000110401
Original member Current member NCBI NM_013935.3 NP_038963.3 Accepted alive Link to Nucleotide Sequence:NM_013935.3Link to Protein Sequence:NP_038963.3Re-query CCDS DB by Nucleotide ID:NM_013935Re-query CCDS DB by Protein ID:NP_038963Link to BLAST:NP_038963.3

Chromosomal Locations for CCDS 50505.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 14026924 14027006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 14035779 14035957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 14040834 14040955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 14044783 14044871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 14044948 14044966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 14045138 14045255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 14055731 14055867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGGCGTCCAGTGAGGAGGACGGCACCAACGGCGCCTCCGAGGCCAGCGACGAGAAGGAAGCCGCCGGCA
AGCGGAGACGCCTAGGCTTACTGGCCACCGCCTGGCTCACCTTCTACAATATCGCCATGACGGCCGGGTG
GTTGGTTCTTGCTATTGCTATGGTACGCTTTTATATGGAAAAAGGAACACACAGAGGTTTATATAAAAGC
ATTCAGAAGACACTTAAGTTTTTCCAAACATTTGCTTTGCTTGAGGTAGTCCATTGTCTGATCGGAATTG
TACCCACTTCTGTGCTTGTGACTGGGGTCCAAGTGAGCTCAAGAATCTTCATGGTGTGGCTCATTACTCA
CAGTATAAAACCCATCCAGAATGAAGAGAGCGTGGTGCTTTTTCTGGTCTCCTGGACTGTGACCGAGATC
ACTCGCTATTCCTTCTACACATTCAGTCTCCTCGACCACTTGCCGCACTTCATTAAATGGGCCAGATACA
ATTTGTTTATCATCTTATATCCCGTTGGAGTTGCTGGGGAACTTCTCACAATATACGCCGCCTTGCCTTA
CGTAAAGAAGTCAGGAATGTTCTCAGTACGGCTTCCCAACAAGTACAATGTTTCTTTTGACTACTACTAT
TTTCTTCTCATAACCATGGCCTCCTATATACCGTTGTTTCCTCAGCTCTATTTTCATATGTTACGTCAGA
GAAGAAAGGTGCTCCACGGGGAGGTGATCGCGGAGAAGGACGATTAA

Translation (248 aa):
MASSEEDGTNGASEASDEKEAAGKRRRLGLLATAWLTFYNIAMTAGWLVLAIAMVRFYMEKGTHRGLYKS
IQKTLKFFQTFALLEVVHCLIGIVPTSVLVTGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVSWTVTEI
TRYSFYTFSLLDHLPHFIKWARYNLFIILYPVGVAGELLTIYAALPYVKKSGMFSVRLPNKYNVSFDYYY
FLLITMASYIPLFPQLYFHMLRQRRKVLHGEVIAEKDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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