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Report for CCDS50509.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50509.1 Public Mus musculus 2 Etl4 23 108 98 CCDS HistoryNCBI Gene:208618Re-query CCDS DB by CCDS ID:50509.1Re-query CCDS DB by GeneID:208618See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50509.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114604.8 ENSMUSP00000110251.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114604.8Link to Ensembl Protein Viewer:ENSMUSP00000110251.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114604Re-query CCDS DB by Protein ID:ENSMUSP00000110251
Original member Current member NCBI NM_001177630.2 NP_001171101.2 Accepted alive Link to Nucleotide Sequence:NM_001177630.2Link to Protein Sequence:NP_001171101.2Re-query CCDS DB by Nucleotide ID:NM_001177630Re-query CCDS DB by Protein ID:NP_001171101Link to BLAST:NP_001171101.2

Chromosomal Locations for CCDS 50509.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 20519858 20519927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20529959 20530242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20661898 20662096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20709405 20709603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20713355 20713448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20743459 20744291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20759547 20759651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20760215 20760264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20766445 20766611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20778026 20778201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20780942 20781072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20781798 20781945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20785044 20785500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20788428 20788611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20797877 20798031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20798616 20798783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20807902 20808024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20808710 20809210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4044 nt):
ATGGAAGAAAGCGAAGGCCAGAAATGTGAGCCGAACCTGCCTCCCTCCGGAGACAGCAGACAGATGCCCC
AA
CAAGGGAGAAGCAATCTTCATGTAACATCTCAGGAAGATGCAGCATGCCGCAGGCCCAGGGAACGCCT
T
TCTAATGGAAACGCCAGGGCTCAGGTTTCCAAGCCTGCCCGAAATATCCCAAGGAGACACACTCTAGGT
GGG
CCCCGAAGTTCCAAAGAGATCCTGGGAATGCAGCCATCTGAGATGGACAGGAAGAGAGAGGCGTTCC
TA
GAACATCTAAAGCAGAAGTACCCCCACCATGCCACAGCCATCATGGGCCACCAGGAGAGGCTGAGGGA
C
CAGACAAAAAGTCCCAAGCTGTCCCACAGTCCTCAACCTCCCAATTTGGGGGATCCGGTTGAACATTTA
TCA
GAGACATCTGGTGACTCTTTGGAAGCCATGTCCGAGGGAGAAGTACCGAGTCCTTTCGCCAGAGGCA
GT
CGTACTCGCGCGAGCCTTCCCGTGGTGAGGTCGGCCAATCAAACAAAGGAAAGATCCCTGGGTGTCCT
C
TACCTCCAGTATGGAGACGAAACCAAACAGCTGCGGATGCCGAATGAAGTCACAAGCACAGACACAATC
CGA
GCTCTCTTCGTCAGTGCCTTTCCCCAGCAGCTCACCATGAAGATGCTGGAGTCGCCCAGTGTTGCCA
TC
TACATCAAGGATGACAGCAGAAATGTCTACTATGAGTTAAATGATGTGAGGAATATCCAAGACAGATC
C
CTTCTCAAAGTATACAACAAGGATCCTTCACATGCATTTAACCACATGACGAAAGCCGTGAACGGAGAC
ATG
AGGATGCAGAGAGAAATTGTTTATGCAAGAGGAGATGGGCTTGTTGCCCCCCGACCAGGATCTGTGG
CT
CACCCACCTCATGTAATTCCAAACTCCCCACCATCAACTCCGGTGCCCCATTCCTTACCTCCCTCTCC
A
TCCAGAATTCCTTACGGGGGCAGCCGTCCAATGGCTATTCCTGGCAATGCCACCATCCCCAGGGACAGA
CTC
TCGAGCCTGCCAGTATCCAGATCCATCTCCCCAAGCCCCAGCGCCATTTTGGAAAGAAGAGATGTCA
AA
CCGGATGAAGACATGAGCAGCAAAAACCTGGTTATGTTCAGAAATGAGGGTTTCTATGCCGACCCTTA
C
CTCTATCATGAAGGACGAATGAGCATAGCCTCATCCCATGGCGGCCACCCTTTGGATGTCCCAGATCAT
GTC
ATTGCGTATCACCGCACAGCGATCCGGTCAGCGAGTGCTTACTGTAGCCCTTCCTTGCAAGCAGAAA
TG
CATATGGAGCAGTCGTTATACAGACAAAAGTCAAGGAAATACCCTGATAGCCATTTGCCTACCTTGGG
C
TCCAAAACGCCCCCAGCCTCTCCACACCGTGTGGGTGACTTAAGAATGATAGACCTGCACCCGCATCTT
AAC
ACACATGGGCCCCCTCACACTCTGCAGCCAGACCGGGCCTCCCCCAGTCGCCAGTCCTTTAAAAAGG
AA
CCCGGCACCCTGGTGTACATCGAAAAGCCACGAAACACTTCAGGATTATCCAGCCTTGTAGACCTGGG
G
CCTCCTCTAGTTGAGAAGCAAGGTTTTGCTTACAGCACCACTACAATCCCCAAAGACAGAGAAACCAGA
GAG
AGGATGCAAGCCATGGAGAAGCAGATTGCCAGTCTAACTGGCCTTGTTCAGTCTGCGCTTTTTAAAG
GG
CCCATTACAAGTAGTAGCAAAGAGGCGTCTAGTGAGAAAATGGTGAAAGCCACAGCCAACAGGAACCA
A
GCAGATGGTGCAGGAACGGCCCATGTTTCTGCAGGGAAGGTTCTGGGCTCTGTGGAGTTCTCCCTGCCG
CCC
AGCCAACCCCTGCCTGCCGGAACCTCGCCCATCCACACTAGCCTGCTTGACATGAGGAGGAACGTGG
CT
GAACTCAGGCTCCAACTCCAGCAGATGAGGCAGCTCCAGCTGCAGAACCAGGAGATTCTGAGGGCGAT
G
ATGAAGAAGGCTGAGCTGGAAATCAGTAACAAAGTGAAGGAGACCATGAAGAGACTAGAGGATCCGGTA
CAG
CGTCAGCGCACCCTGGTGGAGCAAGAGAGACAGAAGTACCTCCACGAAGAAGAGCGGATTGTCAAAA
AG
TTATGTGAGCTGGAGGACTTTGTTGAGGACTTGAAGAAGGACTCTTCCTCCACTGGCAGAGTGGTGAC
C
CTGAAAGATGTGGAAGATGGGGCTTTCCTCCTGCGACAAGTGGGAGAAGCTGTGGCCACTCTCAAAGGA
GAA
TTTCCAACTTTGCAAAATAAGATGCGTGCTGTCCTGCGCATAGAAGTTGAGGCAGTAAGGTTCCTGA
AG
GAAGAGCCACACAAGCTGGACAGTCTCCTGAAGCGTGTGAGGAGCATGACAGATGTCTTGACGATGTT
G
CGGAGGCATGTCACTGATGGGCTCCTGAAAGGCACCGATGCATCCCAGGCTGCACAGTATGTTGCCATG
GAG
AAGGCCACAGCTGCAGAGGTCCTGAAGCATCAGGAAGAGACAGCCCATGCCCCTGGGCAACCCCTCC
AC
TGTAGCACTGGAAGCCCTGGCGATGTGAAGTCAGAAGTGGTGCCCCTATCCACCATGACAGTTCACCA
T
GTACAGAGCTCGCCTGTGGTCATGCAACCTTCCCAGCACTCCTCAGCCTTGATGAACCCAGCCCAGAAC
TTG
CCTGGAGGAACCAGACCTCACACAGCCAGCCCTCCAGCAATCACACAGGAAGTAACCTCTGCCCAGT
CA
GCTCCAGGCCCCCAGTCCCCTCAGACCCCAGTGAATGGTTCCTCCATGCAGAGCTTGTTCATTGAGGA
A
ATTCACAGTGTGAGTGCCAAGAACAGGGCAGTGTCCATTGAGAAGGCAGAAAAGAAATGGGAAGAAAAA
AGG
CAAAATCTGGAACACTATAACGGAAAGGAGTTCGAGAAGCTCCTGGAGGAAGCTCAGGCCAACATCA
TG
AAGTCAATTCCAAACCTGGAGATGCCCCCAGCTTCCAGCCCAGTGTCAAAGGGAGATGCGGCAGGGGA
T
AAGCTGGAGCTGTCAGAAGATTCTCCAAATTCAGAGCAGGAATTGGACAAGATAGGGGGAAAGTCACCC
CCT
CCTCCACCCCCACCCCCTCGGAGAAGCTACCTTCCTGGATCAGGACTTACCACCACGAGATCAGGCG
AT
GTGGTCTACACTGGCAGGAGCATGTCTAAGGTGAGCAGTGAAGACCCTGGGCCAACACCACAGACTAG
A
GCCACAAAATGTCCCCCGGAGGAACCTGCCTCAGCCTGGGCCCCATCCCCACCACCAGTCCCTGCCCCT
TCC
TCCAAGGAGGAGGAGGAAGAAGAAGAAGAAGGAGACAAAATCATGGCAGAACTCCAGGGCTCCAGCA
CC
ACCCCACAGACAAGCCGGATGCCAGTCCCCATGACTTCCAAGAACAGACCCGGAAGCCTGGATAAGGC
C
AGCAAGCAGTCCAAACTACAGGATCCCCGCCAATACCGTCAGGCTAATGGAAGTGCTAAGAAAGCTGGT
GGG
GACTGTAAGCCTACTTCCCCCTCCTTACCTGCTTCTAAGATTCCAGCCCTTTCTCCCAGCTCTGGGA
AA
AGCAGTTCTCTGCCTTCCGCTAGTGGGGACAGCTCTAACCTCCCCAATGCACCTGCTACTAAACCATC
G
ATTGCTTCTACCCCTCTCAGCCCCCAAGCAGGACGGTCCGCTCACTCCGCTTCCCTCATCCCTTCTGTC
TCT
AATGGCTCCTTAAAGTTTCAGAGCCCACCTCACGCAGGTAAAGGCCATCATCACCTTTCGTTCGCAC
TG
CAGACTCAAAATGGCCGAGCTGCCCCTACTACCTCTTCCTCCTCATCCCCTCCTTCCCCTGCCTCCCC
C
ACCTCCCTGAATCAAGGTGCCAGGGGCATCAGGACCATCCATACTCCTAGCCTCGCCAGCTACAAAGCA
CAG
AATGGAAGTTCAAGCAAAGCCACCCCATCCACAGCAAAAGAAACGTCTTAA


Translation (1347 aa):
MEESEGQKCEPNLPPSGDSRQMPQQGRSNLHVTSQEDAACRRPRERLSNGNARAQVSKPARNIPRRHTLG
G
PRSSKEILGMQPSEMDRKREAFLEHLKQKYPHHATAIMGHQERLRDQ
TKSPKLSHSPQPPNLGDPVEHL
S
ETSGDSLEAMSEGEVPSPFARGSRTRASLPVVRSANQTKERSL
GVLYLQYGDETKQLRMPNEVTSTDTI
R
ALFVSAFPQQLTMKMLESPSVAIYIKDDSRNVYYELNDV
RNIQDRSLLKVYNKDPSHAFNHMTKAVNGD
M
R
MQREIVYARGDGLVAPRPGSVAHPPHVIPNSPPSTPVPHSLPPSPSRIPYGGSRPMAIPGNATIPRDR
L
SSLPVSRSISPSPSAILERRDVKPDEDMSSKNLVMFRNEGFYADPYLYHEGRMSIASSHGGHPLDVPDH
V
IAYHRTAIRSASAYCSPSLQAEMHMEQSLYRQKSRKYPDSHLPTLGSKTPPASPHRVGDLRMIDLHPHL
N
THGPPHTLQPDRASPSRQSFKKEPGTLVYIEKPRNTSGLSSLVDLGPPLVEKQGFAYSTTTIPKDRET
R
E
RMQAMEKQIASLTGLVQSALFKGPITSSSKEAS
SEKMVKATANRNQADGAGTAHVSAGKVLGSVEFSLP
P
SQPLPAGTSPIHTSLLDMRRNVAELRLQLQQMRQLQ
LQNQEILRAMMKKAELEISNKVKETMKRLEDPV
Q
RQRTLVEQERQKYLHEEERIVKKL
CELEDFVEDLKKDSSSTGRVVTLKDVEDGAFLLRQVGEAVATLKG
E
FPTLQNKMRAVLRIEVEAVRFLKEEPHKLDSLLKRVRSMTDVLTMLR
RHVTDGLLKGTDASQAAQYVAM
E
KATAAEVLKHQEETAHAPGQPLHCSTGSPGDVKSEVVPLSTMTVHHVQSSPVVMQPSQHSSALMNPAQN
L
PGGTRPHTASPPAITQEVTSAQSAPGPQSPQTPVNGSSMQSLFIEEIHSVSAKNRAVSIE
KAEKKWEEK
R
QNLEHYNGKEFEKLLEEAQANIMKSIPNLEMPPASSPVSKGDAAGDKLELS
EDSPNSEQELDKIGGKSP
P
PPPPPPRRSYLPGSGLTTTRSGDVVYTGRSMSK
VSSEDPGPTPQTRATKCPPEEPASAWAPSPPPVPAP
S
SKEEEEEEEEGDKIMAELQ
GSSTTPQTSRMPVPMTSKNRPGSLDKASKQSKLQDPRQYRQANGSAKKAG
G
DCKPTSPSLPASKIPALSPSSGKSSSLPSASGDSSNLPNAPATKPSIASTPLSPQAGRSAHSASLIPSV
S
NGSLKFQSPPHAGKGHHHLSFALQTQNGRAAPTTSSSSSPPSPASPTSLNQGARGIRTIHTPSLASYKA
Q
NGSSSKATPSTAKETS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser