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Report for CCDS50538.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50538.2 Public Mus musculus 2 Camsap1 23 108 98 CCDS HistoryNCBI Gene:227634Re-query CCDS DB by CCDS ID:50538.2Re-query CCDS DB by GeneID:227634See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 50538.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 50538.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114167.8 ENSMUSP00000109804.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114167.8Link to Ensembl Protein Viewer:ENSMUSP00000109804.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114167Re-query CCDS DB by Protein ID:ENSMUSP00000109804
Original member NCBI NM_001276359.1 NP_001263288.1 Updated not alive Link to Nucleotide Sequence:NM_001276359.1Link to Protein Sequence:NP_001263288.1Re-query CCDS DB by Nucleotide ID:NM_001276359Re-query CCDS DB by Protein ID:NP_001263288
Current member NCBI NM_001276359.2 NP_001263288.1 Accepted alive Link to Nucleotide Sequence:NM_001276359.2Link to Protein Sequence:NP_001263288.1Re-query CCDS DB by Nucleotide ID:NM_001276359Re-query CCDS DB by Protein ID:NP_001263288Link to BLAST:NP_001263288.1

Chromosomal Locations for CCDS 50538.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25929726 25930028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25933591 25933709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25934220 25934335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25935462 25935561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25935850 25936058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25936515 25936651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25937946 25940313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25940865 25940949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25941378 25941469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25944426 25944603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25944942 25945038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25945134 25945273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25952678 25952819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25956247 25956327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25965663 25965824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25966686 25966948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25982782 25982938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4749 nt):
ATGGTGGACGCGGGCGGTCGCTGTGCCGCCGAAGGCTGGAGGAGGATGGAGGCGCCCCCGGAGGGCGCCG
ACCTGGTGCCGCTGGACCGCTACGACGCGGCGCGGGCCAAGATCGCCGCCAACCTGCAGTGGATCTGTGC
GAAGGCCTATGGCCTAGACAACATCCCTGAGGACCTCCGAGACCCGTTTTACATCGACCAGTATGAGCAG
GAGCACATTAAGCCACCCGTTATCAAGCTTCTCCTGTCCAGTGAGCTGTATTGCCGTGTCTGCAGCCTCA
TCCTAAAAGGGGACCAGGTGGCTACCTTGCAAGGACACCAGTCTGTCATCCAGGCCCTGTCCCGGAAGGG
CATCTATGTGATGGAGAGTGATGATACCCCTGTGACAGATGCTGACCTCAGCCAGGCACCTATTAAGATG
AGTGGCCACATGGCGATGGTGGATGCCCTGATGATGGCCTACACTGTGGAGATGATCAGCATTGAGAAGG
TGGTGGCCAGTGTCAAGCGCTTTTCTACATTCAGCGCCTCAAAAGAACTTCCTTATGACCTCGAGGATGC
CATGGTATTCTGGATCAATAAGGTAAATCTTAAAATGAGAGAGATAACAGAGAAAGAAGTTAAATTAAAA
CAGCAGCCACTGGAAAGTCCCGCTCATCAAAAGGTCCGTTATCGGCGAGAGCACCTCTCTGCTAGGCAGT
CACCCTACTTCCCGTTGTTGGAGGACTTGATGAGAGACGGCAGTGATGGCGCTGCTCTCTTAGCAGTGGT
TCACTATTATTGCCCAGAGCAGATGAAACTGGATGATATCTGTCTGAAGGAGGTGCCATCAATGGCTGAC
AGCCTCTATAACATCCGCCTTCTGAGGGAGTTTTCCAACGAGCATCTGAACAAGTGTTTCTATCTCACGC
TGGAGGATATGCTGTATGCCCCCCTAGTGCTGAAGCCGAACGTTATGGTTTTTATCGCTGAGCTCTTCTG
GTGGTTTGAGAACGTCAAACCAGATTTTGTTCAGCCCCGAGATATTCAAGAGCTGAAGGATGCTAAAACA
GTGTTACAGCAGAAGAGCAGCCGGCCTCCTGTCCCTATCTCCAATGCAACCAAACGCAGCTTCCTGGGTA
GCCCTGCTGCCATGAGCCCCGCTGACCAGCCACCATCCACCCAGCCTCTTGCTGAAGGCAGTCATCGGTA
CCACCTCCACTCGGAAGAACCTGAGTGTCTTGGGAAAGGAGCTTCCACATTTAGTCCGTCCCATCCTTTG
TTGCCACTGAGACAGAAACAGCAAAAAGTGTCACAGACAGAGGAAATCCCTGATCAGCGGCACAGGTCGA
ATTCTTTAACTCGGGTTGATGGTCAGCCACGAGGTGCAATAGGAGCATGGCCAGATAAAAAAAACAGGCC
TGTGTCACAGCCAACATCATTTGCTCTCCATCATGCTGCAAGTTGTGATGTGGATCCCAGTTCTGGTGAC
AGTGTCAGCTTAGCTCGCTCTATCAGCAAAGATAGCTTGGCATCTAACATTATCCACCTGACCCCACAGA
ACCAGCCCCATCCCTCCGCTGGAAAGAGCAATGGGAAAAGCCTCCTGAGCAATGTCAACATTGAGGATGA
GGACGAGGAGCTTGTAGCCATCATCAGGACAGATGTGTCTCCTCCTTCCCCACAGATGCCCAGGACCTCA
CCTCAGGCCCCAGGCCTGGTAGCAAGTATCAGGTCTCCCCAGAGACAGGCAGACACTTTGGAGAGTAAGC
CTGACAGTTTTTACTTAGAACCCCTGATGCCAGCAGTACTCCGGCCAGCCAAAGAGAAGCAGATTACCAC
TAAGGAAGATGAGCGTGGAGAAGGAAGGCCAAGGACCATCATGGCCAAGAGGCCTAGTGAGGGCTCCCAG
CCTATGGTACGAAAGAAAGTAAGTGGTGGCCATGGCAGTCGTGACCTGAACAGAACTTTCACCCCAATTC
CTTGTTCAGAATTTGCTGCGAGCATTGATCTTGCGGAGGTAGGACCACAGTCAGCAGAAGCTACAGGGGA
AGGACAGCCTCTGGCCCTGGGTAGATTTGATACATTACCTCAGGGGCAGGCTGCTGATGGTTTCTTTCTC
CATGTAGGCAGGGCTGAGGAAGATGAGGGGAGGTGGTACGTTGGTTCACAAAGTCCTAGCTCCCACGACT
CAGAACCCTGGACCATTTTGAGGCAAGACTCGGACTCTGATGTAGTAGACGTAGAGGATACAGAGCAGGA
TTTTATTGGTGAGGACCACCCTGTGGTTATCCCCAGATATGCTGGTGAGGAAGAGTCAGCCAAACTACAG
GAGGATATGAAAGTGAAGGAACATGAAGACAAGGATGATGCCAGCGGCCGCTCAAGCCCGTGTCTGAGCA
CCACTTCTCAGCTCAGCAGCATGTCCATGGCCAGTGGAAGTGTAAAGATGACCAGCTTTGCTGAAAGGAA
GCTCCAGCGGCTCAACAGCTGTGAGACCAAGTCCAGCACCAGCAGCTCCCAGAAGACCACCCCTGATGCA
TCTGAAAGCTGCCCAGCCCCTCTGACAACGTGGCGCCAGAAGAGGGAGCAGAGTCCAGGCAGGCACAGCA
AGGACCCTGCCAGCCTGCTGGCTTCTGAGCTGGTGCAGCTGCACATGCAGCTGGAGGAAAAGCGCAGAGC
TATTGAAGCCCAGAAGAAAAAGATGGAGGCGCTGTCCGCACGGCAGCGTCTGAAGCTGGGCAAGGCAGCC
TTTCTGCATGTGGTAAAGAAAGGGAAGGCTGATGGTGCCCCACAGCCACTGAGACCCGAACACTTCACAA
AGGAATTCACACAGCACAATGGGGAGGACTTGGATGATGGCACTTGTAAAACTGAAGGGTTCCTTGTCAA
AGAAGAGCAGAGAGATCTCAGTGACGCTCAGGATGTGGCATTTGTCCAGCTACATAAGCCCAGGGACCCA
GCTGCTCTGCATGATGGAGAGAAGCACAGAATGATTTCTACGGCCCTCCTCGAGGATAGTGTTGGTGAGG
TAGATGTGAACGAGTGTGACCTGTCCATTGAGAAGCTCAATGAGACCATCAGTACATTGCAGCAGGCTAT
ACTGAAGATCTCCCAGCAGCAAGAGCAGCTTCTCATGAAGTCCCCCACAGTGCCAACACCGGGCACTAAA
AATAACTGCCAGGACCAAAAAATAAAGGCCCCAGTCCACTTTGTTGAGCCACTCTCTCCAACTGGCGTGC
CTGGCCACCGCAAACCACCACGGCTTGGCCAGGGCCGGAATTCCCGCTCAGGAAGGCCGGCTGAACTGAA
GGTTCCAAAAGACAGGCAGCAGGGTTGTTCTCGGAGCAAAACCCCAACACCCAGTGTGGAGACACTCCCA
CAGTCAAGGTCTTTACCTCCAAGTACCCATCCACGGTCACCCTCCGACCCAGGCGGGGAACTCCCTGAGA
AGTGTCTCTTCGACAGTTATAGGCTCCATGATGAGAGTAACCATCGGACATTTGTTCTGTCCTCTTGCAA
AGATGCAAACATTGTATCAGAACAGGTGAACTTTAAAGAGGGTCTAGATACAAGTGTGAAAGAGGCAGGG
CTGAGCTCCTCTACCATCACAGGCAAAGAACATACTCCAGTGGAAGAGCCGCTGAGGAGCAAGGCCAGCC
TCATTGAGGTAGACCTCTCTGACCTGAAGGCCCCTGATGAGGATGGAGAGGTGGTTGGCCATGAGAGCTC
GGTGGAGCTTGGTGGAGATAGTGACCAGAAGCCTGGGGTTGGTTTCTTCTTCAAGGATGAACAGAAAGCA
GAAGATGAGCTTGCTAAGAAGCGGGCAGCCTTCCTTTTGAAACAGCAGCGCAAGGCTGAAGAGGCTCGTG
CGCGCAAGCAGCAGCTGGAGGCAGAAGTGGAGCTCAAGCGAGATGAAGCCCGGCGTAAGGCTGAAGAGGA
TCGACTACGGAAGGAGGAGGAGAAGGCAAGGCGAGAGCTCATTAAACAGGAATACTTACGGAGGAAGCAG
CAGCAGGCCTTGGAGGAGCAAGGACTTGGCAAACCTAAATCAAAGCCTAAAAAGCCTCGGCCAAAGTCAG
TTCACCGGGAAGAGTCTTACAGCGACTCTGGCACCAAGTGCTCTTCTACCCATAACTTGAGCCAAACTCA
CTCTGGCTCCAGCCTATCCTTGGCATCTGCAGCAACAACAGAACCTGAGAGTGTTTATTCGGGGGGCACA
CCTTCTCACCGAGTTGAATCACTGGAAGCTTTACCTATCCTGAGCCGCAACCCCAGTCGGAGCACAGACC
GAGACTGGGAGACTGCATCAGCAGCTTCCTCTTTGGCCTCTGTGGCTGAGTACACAGGTCCTAAACTCTT
TAAGGAGCCCAGTAGCAAATCAAACAAACCAATTATTCACAATGCCATCTCCCACTGCTGTCTGGCTGGA
AAAGTGAATGAGCCTCACAAGAATTCAATATTGGAGGAGCTGGAGAAGTGTGATGCCAACCACTATATTA
TTCTGTTCCGAGATGCGGGCTGCCAGTTCAGGGCACTTTACTGCTACCAACCCGACACTGAAGAAATCTA
CAAACTCACTGGCACGGGGCCAAAAAGCATCACCAAGAAGATGATTGACAAACTATATAAATACAGCTCA
GACCGAAAGCAGTTTAACCTGATCCCAGCCAAGACCATGTCAGTCAGCGTGGATGCACTCACGATCCATA
ACCACTTGTGGCAGCCCAAGCGGCCCACGGTGCCAAAGAAGACCCAGACTCGTAAGTGA

Translation (1582 aa):
MVDAGGRCAAEGWRRMEAPPEGADLVPLDRYDAARAKIAANLQWICAKAYGLDNIPEDLRDPFYIDQYEQ
EHIKPPVIKLLLSSELYCRVCSLILKGDQVATLQGHQSVIQALSRKGIYVMESDDTPVTDADLSQAPIKM
SGHMAMVDALMMAYTVEMISIEKVVASVKRFSTFSASKELPYDLEDAMVFWINKVNLKMREITEKEVKLK
QQPLESPAHQKVRYRREHLSARQSPYFPLLEDLMRDGSDGAALLAVVHYYCPEQMKLDDICLKEVPSMAD
SLYNIRLLREFSNEHLNKCFYLTLEDMLYAPLVLKPNVMVFIAELFWWFENVKPDFVQPRDIQELKDAKT
VLQQKSSRPPVPISNATKRSFLGSPAAMSPADQPPSTQPLAEGSHRYHLHSEEPECLGKGASTFSPSHPL
LPLRQKQQKVSQTEEIPDQRHRSNSLTRVDGQPRGAIGAWPDKKNRPVSQPTSFALHHAASCDVDPSSGD
SVSLARSISKDSLASNIIHLTPQNQPHPSAGKSNGKSLLSNVNIEDEDEELVAIIRTDVSPPSPQMPRTS
PQAPGLVASIRSPQRQADTLESKPDSFYLEPLMPAVLRPAKEKQITTKEDERGEGRPRTIMAKRPSEGSQ
PMVRKKVSGGHGSRDLNRTFTPIPCSEFAASIDLAEVGPQSAEATGEGQPLALGRFDTLPQGQAADGFFL
HVGRAEEDEGRWYVGSQSPSSHDSEPWTILRQDSDSDVVDVEDTEQDFIGEDHPVVIPRYAGEEESAKLQ
EDMKVKEHEDKDDASGRSSPCLSTTSQLSSMSMASGSVKMTSFAERKLQRLNSCETKSSTSSSQKTTPDA
SESCPAPLTTWRQKREQSPGRHSKDPASLLASELVQLHMQLEEKRRAIEAQKKKMEALSARQRLKLGKAA
FLHVVKKGKADGAPQPLRPEHFTKEFTQHNGEDLDDGTCKTEGFLVKEEQRDLSDAQDVAFVQLHKPRDP
AALHDGEKHRMISTALLEDSVGEVDVNECDLSIEKLNETISTLQQAILKISQQQEQLLMKSPTVPTPGTK
NNCQDQKIKAPVHFVEPLSPTGVPGHRKPPRLGQGRNSRSGRPAELKVPKDRQQGCSRSKTPTPSVETLP
QSRSLPPSTHPRSPSDPGGELPEKCLFDSYRLHDESNHRTFVLSSCKDANIVSEQVNFKEGLDTSVKEAG
LSSSTITGKEHTPVEEPLRSKASLIEVDLSDLKAPDEDGEVVGHESSVELGGDSDQKPGVGFFFKDEQKA
EDELAKKRAAFLLKQQRKAEEARARKQQLEAEVELKRDEARRKAEEDRLRKEEEKARRELIKQEYLRRKQ
QQALEEQGLGKPKSKPKKPRPKSVHREESYSDSGTKCSSTHNLSQTHSGSSLSLASAATTEPESVYSGGT
PSHRVESLEALPILSRNPSRSTDRDWETASAASSLASVAEYTGPKLFKEPSSKSNKPIIHNAISHCCLAG
KVNEPHKNSILEELEKCDANHYIILFRDAGCQFRALYCYQPDTEEIYKLTGTGPKSITKKMIDKLYKYSS
DRKQFNLIPAKTMSVSVDALTIHNHLWQPKRPTVPKKTQTRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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