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Report for CCDS50543.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50543.1 Public Mus musculus 2 Surf1 23 108 98 CCDS HistoryNCBI Gene:20930Re-query CCDS DB by CCDS ID:50543.1Re-query CCDS DB by GeneID:20930See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 50543.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015934.12 ENSMUSP00000015934.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015934.12Link to Ensembl Protein Viewer:ENSMUSP00000015934.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000015934Re-query CCDS DB by Protein ID:ENSMUSP00000015934
Original member Current member NCBI NM_013677.2 NP_038705.2 Accepted alive Link to Nucleotide Sequence:NM_013677.2Link to Protein Sequence:NP_038705.2Re-query CCDS DB by Nucleotide ID:NM_013677Re-query CCDS DB by Protein ID:NP_038705Link to BLAST:NP_038705.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038705.2 306 P09925 306 100% 0 0

Chromosomal Locations for CCDS 50543.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 26913436 26913505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26913577 26913658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26913913 26914075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26914175 26914247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26914707 26914895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26915432 26915514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26915596 26915729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26915955 26916006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26916257 26916331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGCTGCTGTGATGGCTTTGGCTGTGCTGCCGCGACGGATGACGCGGTGGTCGCAATGGGCCTACGCGG
GACGGGCCCAGTTCTGCGCTGTCAGGAGGAGCGTCTTTGGGTTTTCTGTCCGCTCAGGGATGGTCTGTAG
GCCACGCAGGTGTTGCAGTTCTACTGCTGAAACAGCCGCCGCTAAAGCAGAGGACGATTCTTTTCTCCAG
TGGTTCCTGCTTTTAATCCCTGCTACTGCTTTTGGCCTGGGGACTTGGCAGGTCCAACGTCGGAAATGGA
AGCTGAAACTTATTGCAGAATTAGAGTCTCGAGTCATGGCTGAGCCCATCCCTCTACCAGCAGACCCAAT
GGAACTGAAAAATTTGGAGTACAGGCCAGTGAAGGTCAGGGGCCACTTTGACCACTCTAAAGAGTTGTAC
ATAATGCCTCGGACCATGGTGGATCCTGTCCGAGAGGCGCGAGATGCTGGCAGACTATCCTCAACTGAAA
GTGGGGCCCATGTAGTTACTCCTTTCCATTGCTCTGACTTGGGAGTCACCATCCTGGTTAATAGAGGGTT
TGTTCCCAGGAAGAAAGTGAATCCTGAGACCAGACAGAAAGGCCAGGTTCTGGGAGAAGTAGACCTAGTT
GGCATAGTGAGGCTCACAGAAAACAGGAAGCCCTTTGTTCCGGAGAACAGCCCAGAAAGGAATCACTGGT
ATTATCGAGACCTGGAAGCTATGGCCAAGATAACAGGAGCGGACCCCATTTTCATTGATGCAGACTTCCA
CAGCACAGCCCCCGGCGGGCCCATCGGAGGACAGACGAGAGTGACTCTGCGCAATGAGCACATGCAGTAC
ATCCTTACCTGGTACGGACTGTGTGCGGCCACATCATATTTGTGGTTCCAAAAATTTGTACGTCGGACAC
CCATCATGTGA

Translation (306 aa):
MAAVMALAVLPRRMTRWSQWAYAGRAQFCAVRRSVFGFSVRSGMVCRPRRCCSSTAETAAAKAEDDSFLQ
WFLLLIPATAFGLGTWQVQRRKWKLKLIAELESRVMAEPIPLPADPMELKNLEYRPVKVRGHFDHSKELY
IMPRTMVDPVREARDAGRLSSTESGAHVVTPFHCSDLGVTILVNRGFVPRKKVNPETRQKGQVLGEVDLV
GIVRLTENRKPFVPENSPERNHWYYRDLEAMAKITGADPIFIDADFHSTAPGGPIGGQTRVTLRNEHMQY
ILTWYGLCAATSYLWFQKFVRRTPIM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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