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Report for CCDS50621.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50621.1 Public Mus musculus 2 Ctnnd1 23 108 98 CCDS HistoryNCBI Gene:12388Re-query CCDS DB by CCDS ID:50621.1Re-query CCDS DB by GeneID:12388See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50621.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111670.8 ENSMUSP00000107299.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111670.8Link to Ensembl Protein Viewer:ENSMUSP00000107299.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111670Re-query CCDS DB by Protein ID:ENSMUSP00000107299
Original member Current member NCBI NM_001085449.1 NP_001078918.1 Accepted alive Link to Nucleotide Sequence:NM_001085449.1Link to Protein Sequence:NP_001078918.1Re-query CCDS DB by Nucleotide ID:NM_001085449Re-query CCDS DB by Protein ID:NP_001078918Link to BLAST:NP_001078918.1

Chromosomal Locations for CCDS 50621.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 84602892 84602900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84603649 84603752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84605184 84605246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84608329 84608416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84608960 84609074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84609530 84609722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84610508 84610658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84610763 84610890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84612024 84612092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84612936 84613089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84613888 84614005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84615088 84615271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84616480 84616943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84619919 84620454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84620835 84620951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2493 nt):
ATGCAGGAGCCAGGACAGATTGTGGAAACCTACACCGAGGAGGACCCTGAAGGAGCCATGTCTGTTGTTT
CTGTGGAGACCACAGATGATGGGACCACTAGACGCACGGAGACCACAGTCAAAAAAGTTGTGAAGACAAT
GACAACTCGGACAGTACAGCCTGTCCCCATGGGGCCAGACGGGCTGCCCGTGGACGCCTCAGCAGTCTCC
AATAACTATATCCAGACCTTGGGCCGTGATTTTCGCAAGAATGGCAATGGGGGCCCTGGTCCCTATGTGG
GGCAAGCGGGCACTGCCACTCTTCCTAGGAACTTCCACTATCCTCCAGATGGGTATGGCCGACACTATGA
AGATGGTTATCCAGGTGGCAGTGACAACTACGGCAGTCTGTCCCGGGTGACCCGAATTGAGGAGCGGTAT
AGGCCCAGCATGGAAGGCTACCGGGCACCCAGTAGACAAGATGTCTATGGGCCCCAGCCCCAGGTTCGAG
TAGGTGGAAGCAGTGTGGACCTGCATCGTTTTCATCCTGAGCCTTACGGGCTAGAGGATGACCAGCGCAG
CATGGGCTATGATGACCTCGATTACGGCATGATGTCTGATTATGGTACTGCCCGTCGGACAGGAACACCC
TCTGACCCTCGACGACGCCTCAGGAGCTATGAAGACATGATTGGTGAAGAGGTGCCGCCTGATCAGTACT
ATTGGGCTCCTTTAGCTCAGCATGAGCGGGGCAGTTTAGCAAGCTTGGATAGTTTGCGAAAGGGAATGCC
CCCACCTTCAAACTGGAGACAGCCTGAGCTGCCAGAGGTGATTGCCATGTTAGGCTTCCGCTTGGATGCT
GTTAAGTCCAATGCAGCTGCATACCTGCAGCACTTATGCTACCGCAATGACAAGGTGAAGACTGACGTGC
GGAAGCTCAAGGGTATCCCGATATTGGTAGGATTGTTAGACCATCCCAAAAAGGAAGTGCACCTCGGAGC
CTGTGGAGCTCTCAAGAATATCTCTTTTGGACGTGACCAAGATAACAAGATCGCCATAAAAAACTGTGAT
GGTGTTCCTGCTCTGGTCCGATTGCTCCGAAAGGCTCGTGATATGGACCTGACTGAAGTGATTACTGGAA
CCCTGTGGAATCTCTCATCCCATGATTCAATCAAAATGGAGATTGTGGACCATGCGCTACATGCCTTGAC
AGATGAAGTTATCATTCCACATTCTGGTTGGGAGAGAGAACCTAATGAAGACTGTAAGCCACGGCATATT
GAATGGGAGTCAGTGCTTACCAACACTGCTGGCTGCCTTCGGAACGTAAGCTCAGAGAGGAGTGAAGCCC
GGAGGAAACTTCGGGAATGTGACGGCTTAGTTGATGCCCTCATTTTCATCGTTCAGGCAGAAATTGGGCA
GAAGGATTCAGACAGTAAGCTTGTGGAGAATTGTGTTTGCCTCCTCCGGAACTTATCATACCAAGTTCAT
CGTGAAATCCCACAGGCAGAGCGTTACCAGGAGGCCCTTCCTACTGTGGCTAACAGTACTGGGCCACACG
CTGCCAGTTGCTTTGGAGCCAAGAAGGGCAAAGGGAAAAAGCCTACAGAGGATCCAGCAAATGATACAGT
GGATTTCCCTAAAAGAACTAGTCCTGCTCGAGGCTATGAACTCTTATTTCAGCCAGAAGTGGTGCGAATA
TACATTTCACTCCTTAAGGAGAGCAAGACGCCTGCCATCTTAGAAGCCTCGGCCGGAGCTATCCAGAACT
TGTGTGCTGGGCGTTGGACATATGGCAGATACATCCGCTCTGCTCTTCGTCAGGAGAAGGCTCTCTCTGC
CATAGCTGAGCTCCTTACGAGTGAGCATGAGCGAGTAGTAAAAGCTGCTTCTGGGGCACTGAGAAATCTG
GCTGTGGATGCTCGGAACAAAGAGTTAATTGGCAAGCATGCTATTCCTAACTTGGTAAAGAATCTGCCAG
GAGGTCAACAGAACTCCTCCTGGAATTTTTCTGAAGATACTGTGGTCTCCATATTGAACACCATCAACGA
AGTTATCGCTGAGAACTTAGAAGCTGCCAAAAAGCTTCGAGAGACGCAGGGTATTGAGAAGCTGGTGTTG
ATCAACAAATCAGGGAATCGTTCAGAAAAAGAAGTCCGGGCAGCAGCTCTTGTCCTGCAGACAATCTGGG
GCTATAAGGAGCTTCGGAAGCCACTGGAAAAAGAAGGATGGAAGAAATCAGACTTCCAGGTGAATCTAAA
CAATGCATCTAGAAGCCAGAGCAGCCATTCATATGATGATAGCACTCTCCCCCTCATTGACCGGAATCAA
AAATCAGATAAGAAACCTGACCGGGAAGAAATTCCAATGAGCAATATGGGGTCAAACACAAAATCATTAG
ATAACAACTATTCCACACTGAATGAGAGAGGAGACCACAACAGAACACTGGACCGATCTGGGGATCTGGG
TGATATGGAACCATTGAAGGGAGCACCCTTGATGAAGATTTAG

Translation (830 aa):
MQEPGQIVETYTEEDPEGAMSVVSVETTDDGTTRRTETTVKKVVKTMTTRTVQPVPMGPDGLPVDASAVS
NNYIQTLGRDFRKNGNGGPGPYVGQAGTATLPRNFHYPPDGYGRHYEDGYPGGSDNYGSLSRVTRIEERY
RPSMEGYRAPSRQDVYGPQPQVRVGGSSVDLHRFHPEPYGLEDDQRSMGYDDLDYGMMSDYGTARRTGTP
SDPRRRLRSYEDMIGEEVPPDQYYWAPLAQHERGSLASLDSLRKGMPPPSNWRQPELPEVIAMLGFRLDA
VKSNAAAYLQHLCYRNDKVKTDVRKLKGIPILVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCD
GVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI
EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVH
REIPQAERYQEALPTVANSTGPHAASCFGAKKGKGKKPTEDPANDTVDFPKRTSPARGYELLFQPEVVRI
YISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAELLTSEHERVVKAASGALRNL
AVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVVSILNTINEVIAENLEAAKKLRETQGIEKLVL
INKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWKKSDFQVNLNNASRSQSSHSYDDSTLPLIDRNQ
KSDKKPDREEIPMSNMGSNTKSLDNNYSTLNERGDHNRTLDRSGDLGDMEPLKGAPLMKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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