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Report for CCDS50641.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50641.1 Public Mus musculus 2 Arhgap1 23 108 98 CCDS HistoryNCBI Gene:228359Re-query CCDS DB by CCDS ID:50641.1Re-query CCDS DB by GeneID:228359See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50641.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111331.8 ENSMUSP00000106963.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111331.8Link to Ensembl Protein Viewer:ENSMUSP00000106963.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111331Re-query CCDS DB by Protein ID:ENSMUSP00000106963
Original member Current member NCBI NM_001145902.1 NP_001139374.1 Accepted alive Link to Nucleotide Sequence:NM_001145902.1Link to Protein Sequence:NP_001139374.1Re-query CCDS DB by Nucleotide ID:NM_001145902Re-query CCDS DB by Protein ID:NP_001139374Link to BLAST:NP_001139374.1

Chromosomal Locations for CCDS 50641.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 91650135 91650252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91654073 91654207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91654436 91654531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91662298 91662385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91668197 91668328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91668486 91668572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91668729 91668827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91669186 91669293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91669385 91669461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91669652 91669729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91670146 91670274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91670466 91670569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91670712 91670900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGGCGGAAGTGGTTGGGGAGCTGGGGGCCCCCGAGGGGGCGGTTCCCATTCCCATCTCGGAGCCGGATG
TTTGCCGAGCTTTGACAGGCGTGGCAGAGGAAGCATTGCCGGAACGAGCCATGGACCCTCTCTCAGAGCT
GCAAGATGACCTGACGCTGGATGACACCAGCCAAGCTCTGAACCAGTTGAAGCTGGCCTCCATTGATGAG
AAGAACTGGCCTTCTGATGAAATGCCAGACTTCCCCAAGTCAGATGACTCCAAAAGCAGCTCTCCAGAAC
CTGTGACACACCTGAAGTGGGATGACCCTTACTATGACATTGCCCGGCACCAGATTGTGGAAGTAGCCGG
TGATGATAAGTATGGGCGGAAGATCATTGTATTCAGTGCTTGCCGGATGCCCCCCAGCCACCAGCTGGAC
CACAGCAAGCTCTTGGGGTATTTGAAACACACATTGGACCAGTATGTGGAGAGTGACTACACACTCCTGT
ACCTGCACCATGGCCTGACCAGTGACAACAAGCCCTCCCTCAGCTGGCTACGGGATGCCTACCGAGAGTT
TGACCGCAAGTACAAGAAGAACATCAAGGCTCTGTACATCGTGCACCCAACCATGTTCATCAAAACTCTG
CTTATCCTCTTTAAGCCTCTCATCAGTTTCAAGTTTGGACGGAAGATCTTCTACGTGAATTACCTGAGTG
AGCTGAGCGAGCACGTGAAGCTGGAGCAGTTGGGGATCCCTCGCCAAGTGCTCAAGTATGATGACTTCCT
CAAATCCACACAGAAAAGCCCTGCAACAGCTCCCAAGCCCATGCCACCACGGCCCCCCCTGCCCAATCAG
CAGTTTGGGGTCTCCTTACAGCACCTCCAGGAGAAAAGCCCAGGCCAGGACCCCATTCCCATTGTCCTCA
GGGAGACCGTCGCCTACTTGCAGGCTCACGCTCTCACCACTGAGGGCATCTTCCGGAGGTCTGCCAACAC
CCAGGTTGTCCGGGAAGTGCAGCAGAAATACAATATGGGGCTGCCGGTGGACTTTGACCAGTACAACGAG
CTGCACTTGCCCGCTGTCATCCTCAAGACATTCCTTCGGGAGCTTCCTGAACCCTTGCTAACCTTTGACC
TGTACCCCCATGTTGTGGGCTTCCTCAATATTGATGAAAGCCAGAGAGTGGAAGTGACACAGCAGGTTCT
CCAAACTCTGCCAGAGGAGAACTACCAGGTGCTTCATTTCCTGACTGCCTTCCTGGTGCAGATATCTGCC
CACTGTGACCAGAACAAGATGACCAACACTAACTTGGCTGTAGTCTTCGGCCCTAACCTGCTCTGGGCTA
AAGATGCTGCCATCACCCTCAAGGCTATCAATCCCATCAACACCTTCACTAAGTTCCTCCTGGATCATCA
AGGGGAATTGTTCCCCAGCACAGATGCCCAGGGGGTCTGA

Translation (479 aa):
MAEVVGELGAPEGAVPIPISEPDVCRALTGVAEEALPERAMDPLSELQDDLTLDDTSQALNQLKLASIDE
KNWPSDEMPDFPKSDDSKSSSPEPVTHLKWDDPYYDIARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLD
HSKLLGYLKHTLDQYVESDYTLLYLHHGLTSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTL
LILFKPLISFKFGRKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLKSTQKSPATAPKPMPPRPPLPNQ
QFGVSLQHLQEKSPGQDPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNE
LHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVEVTQQVLQTLPEENYQVLHFLTAFLVQISA
HCDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINTFTKFLLDHQGELFPSTDAQGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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