NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50842.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50842.1 Public Mus musculus 2 Arfgap1 23 108 98 CCDS HistoryNCBI Gene:228998Re-query CCDS DB by CCDS ID:50842.1Re-query CCDS DB by GeneID:228998See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50842.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108861.7 ENSMUSP00000104489.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108861.7Link to Ensembl Protein Viewer:ENSMUSP00000104489.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108861Re-query CCDS DB by Protein ID:ENSMUSP00000104489
Original member Current member EBI ENSMUST00000108862.7 ENSMUSP00000104490.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108862.7Link to Ensembl Protein Viewer:ENSMUSP00000104490.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108862Re-query CCDS DB by Protein ID:ENSMUSP00000104490
Original member Current member NCBI NM_001177707.1 NP_001171178.1 Accepted alive Link to Nucleotide Sequence:NM_001177707.1Link to Protein Sequence:NP_001171178.1Re-query CCDS DB by Nucleotide ID:NM_001177707Re-query CCDS DB by Protein ID:NP_001171178Link to BLAST:NP_001171178.1
Original member Current member NCBI NM_001177708.1 NP_001171179.1 Accepted alive Link to Nucleotide Sequence:NM_001177708.1Link to Protein Sequence:NP_001171179.1Re-query CCDS DB by Nucleotide ID:NM_001177708Re-query CCDS DB by Protein ID:NP_001171179Link to BLAST:NP_001171179.1

Chromosomal Locations for CCDS 50842.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 180971055 180971114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180971574 180971683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180971984 180972155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180972695 180972795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180973461 180973547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180974060 180974156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180976307 180976363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180977320 180977352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180979171 180979227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180980398 180980474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180981037 180981370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1185 nt):
ATGGCCAGCCCAAGAACCAGGAAAGTTCTTAAGGAAGTCCGGGCACAGGATGAGAATAATGTTTGCTTTG
AGTGTGGTGCGTTCAATCCTCAGTGGGTCAGCGTGACTTATGGCATCTGGATCTGCCTGGAATGCTCTGG
GAGACACCGTGGGCTTGGGGTGCACCTCAGCTTTGTGCGCTCTGTTACAATGGACAAATGGAAGGACATT
GAGCTGGAGAAGATGAAGGCTGGTGGGAATGCTAAGTTCCGAGAGTTCCTGGAGACACAGGACGACTATG
AGCCTAGCTGGTCACTGCAGGACAAGTACAGCAGCAGAGCCGCGGCGCTCTTCAGGGATAAGGTGGCTAC
TTTGGCAGAAGGTAAAGAGTGGTCTCTGGAGTCATCGCCTGCACAGAACTGGACCCCACCTCAGCCCAAG
ACACTGCAGTTCACTGCCCACCGAGCCTCTGGCCAGCCACAGAGTGCAGCCGCCTCTGGGGACAAGGCTT
TTGAAGATTGGCTGAATGATGACCTGGGTTCCTACCAGGGTGCTCAGGAGAATCGCTATGTAGGGTTTGG
GAACACAGTGCCACCTCAGAAGAGAGAAGATGACTTCCTCAACAATGCCATGTCATCGCTGTACTCGGGC
TGGAGCAGTTTTACCACTGGGGCGAGCAAGTTTGCATCTGCAGCAAAGGAGGGTGCTACAAAATTTGGAT
CTCAAGCAAGTCAGAAGGCTTCGGAGTTGGGCCACAGCCTGAATGAGAATGTTCTCAAGCCTGCACAGGA
GAAGGTCCAGGGAGTTGGCAGTAAGGGATGGCGTGATGTCACTACTTTCTTCTCTGGGAAAGCCGAAGAC
TCTTCAGACAGACCCTTAGAGGGCCACAGCTACCAGAACAGCAGTGGAGACAACTCTCAGAACAGCAACA
TAGACCAGAGCTTCTGGGAGACCTTTGGGAGTGCTGAGCCCCCCAAGGCCAAGTCCCCAAGCAGTGACAG
CTGGACCTGTGCAGATGCTTCAACAGGGAGGAGGAGCTCGGACAGCTGGGACGTTTGGGGCTCAGGTTCC
GCATCCAACAACAAGAACAGCAATAGCGATGGCTGGGAGAGTTGGGAGGGAGCCAGTGGGGAGGGCAGGG
CAAAGGCCACCAAGAAGGCAGCCCCATCCACGGCTGATGAGGGCTGGGACAACCAGAACTGGTAG

Translation (394 aa):
MASPRTRKVLKEVRAQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDI
ELEKMKAGGNAKFREFLETQDDYEPSWSLQDKYSSRAAALFRDKVATLAEGKEWSLESSPAQNWTPPQPK
TLQFTAHRASGQPQSAAASGDKAFEDWLNDDLGSYQGAQENRYVGFGNTVPPQKREDDFLNNAMSSLYSG
WSSFTTGASKFASAAKEGATKFGSQASQKASELGHSLNENVLKPAQEKVQGVGSKGWRDVTTFFSGKAED
SSDRPLEGHSYQNSSGDNSQNSNIDQSFWETFGSAEPPKAKSPSSDSWTCADASTGRRSSDSWDVWGSGS
ASNNKNSNSDGWESWEGASGEGRAKATKKAAPSTADEGWDNQNW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH