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Report for CCDS50929.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50929.1 Public Mus musculus 3 Schip1 23 108 98 CCDS HistoryNCBI Gene:30953Re-query CCDS DB by CCDS ID:50929.1Re-query CCDS DB by GeneID:30953See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50929.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170788.8 ENSMUSP00000126443.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170788.8Link to Ensembl Protein Viewer:ENSMUSP00000126443.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170788Re-query CCDS DB by Protein ID:ENSMUSP00000126443
Original member Current member NCBI NM_013928.5 NP_038956.2 Accepted alive Link to Nucleotide Sequence:NM_013928.5Link to Protein Sequence:NP_038956.2Re-query CCDS DB by Nucleotide ID:NM_013928Re-query CCDS DB by Protein ID:NP_038956Link to BLAST:NP_038956.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038956.2 244 P0DPB4-3 244 100% 0 0

Chromosomal Locations for CCDS 50929.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 68572634 68572663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68596150 68596268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68616440 68616557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68617611 68617808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68618596 68618719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68620973 68621066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68625807 68625858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGGTACATCAGGAGAACTGCTCGTACCAGGCACAGAAGAATGAGAGAGAGTCTATCAGACAGAAGTTGG
CACTCGGAAGCTTCTTTGACGATGGCCCAGGAATCTATACCAGCTGCAGCAAAAGTGGGAAGCCAAGCCT
TTCTGCAAGACTACAGAGCGGGATGAACCTCCAGATATGCTTTGTCAATGACAGCGGCAGTGACAAGGAC
AGCGATGCAGATGACAGTAAGACGGAAACCAGCTTGGACACGCCCTTGTCCCCCATGAGCAAGCAGAGTT
CTTCCTATTCGGATAGAGACACAACTGAGGAGGAGTCTGAATCCCTGGATGACATGGACTTCCTCACAAG
GCAAAAGAAGCTACAAGCTGAAGCCAAAATGGCTCTGGCCATGGCCAAACCAATGGCCAAAATGCAAGTA
GAAGTGGAAAAACAGAACAGGAAAAAGTCTCCCGTCGCTGATCTTCTCCCACACATGCCTCACATAAGCG
AATGTTTGATGAAAAGAAGCTTAAAGCCCACCGACCTGAGAGACATGACTATCGGGCAGCTACAAGTGAT
CGTCAATGACCTCCACTCCCAGATTGAAAGTTTGAATGAAGAGTTGGTCCAGCTGCTCCTTATTCGAGAT
GAGCTGCACACAGAACAAGATGCCATGCTGGTGGACATTGAAGACTTGACTAGACACGCTGAGAGTCAGC
AGAAGCACATGGCTGAGAAAATGCCCGCGAAGTGA

Translation (244 aa):
MVHQENCSYQAQKNERESIRQKLALGSFFDDGPGIYTSCSKSGKPSLSARLQSGMNLQICFVNDSGSDKD
SDADDSKTETSLDTPLSPMSKQSSSYSDRDTTEEESESLDDMDFLTRQKKLQAEAKMALAMAKPMAKMQV
EVEKQNRKKSPVADLLPHMPHISECLMKRSLKPTDLRDMTIGQLQVIVNDLHSQIESLNEELVQLLLIRD
ELHTEQDAMLVDIEDLTRHAESQQKHMAEKMPAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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