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Report for CCDS50959.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50959.1 Public Mus musculus 3 Scamp3 23 108 98 CCDS HistoryNCBI Gene:24045Re-query CCDS DB by CCDS ID:50959.1Re-query CCDS DB by GeneID:24045See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50959.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029684.14 ENSMUSP00000029684.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029684.14Link to Ensembl Protein Viewer:ENSMUSP00000029684.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029684Re-query CCDS DB by Protein ID:ENSMUSP00000029684
Original member Current member NCBI NM_011886.3 NP_036016.2 Accepted alive Link to Nucleotide Sequence:NM_011886.3Link to Protein Sequence:NP_036016.2Re-query CCDS DB by Nucleotide ID:NM_011886Re-query CCDS DB by Protein ID:NP_036016Link to BLAST:NP_036016.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036016.2 349 O35609 349 100% 0 0

Chromosomal Locations for CCDS 50959.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89177592 89177657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89177990 89178067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89179095 89179223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89179317 89179437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89180252 89180380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89180729 89180888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89181175 89181276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89181926 89182043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89182299 89182445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGGCTCAGAGCAGAGACACCGGGAATCCATTCCCCGACTCCGGCGAGCTTGACAATCCCTTTCAGGACC
CAGCTGTGATCCAGCACCGACCCAGCCAGCAGTATGCCACGCTGGACGTCTACAACCCCTTTGAGAACCG
AGAGCCCCCACCAGCCTACGAGCCTCCTGCTCCAGCCCCAGCACCTCTACCGCCACCCTCAGCTCCCTCT
GTACAGTCCTCAAGAAAGCTCAGCCCCACAGAGCCCAGGAACTACGGCTCCTACAGCACCCAGGCCTCAG
CTGCAGCGGCCACTGCTGAGCTGCTGAAGAAGCAGGAGGAACTCAACCGCAAGGCAGAGGAGTTGGACCG
CCGGGAGCGAGAACTGCAGCATGTCGCCCTGGGTGGTGCAGGCACTCGACAGAACAACTGGCCTCCCCTA
CCGTCTTTTTGCCCTGTAAAGCCTTGCTTTTTCCAAGACATCTCTATGGAGATACCCCAAGAATTTCAGA
AGACGGTGTCCACCATGTACTACCTCTGGATGTGCAGCACTCTGGCTCTTCTCCTGAACTTCTTCGCCTG
CCTGGCCAGGTTCTGTGTGGACACCGGCAGTGGCTCAGGCTTTGGGCTGTCTATGCTCTGGCTGCTCCTT
TTCACTCCCTGCTCCTTTGTCTGCTGGTACCGCCCGATGTATAAGGCTTTCCGGAGTGATAGTTCATTCA
ATTTCTTCGTTTTTTTCTTCATTTTCTTCGTCCAGGATGTGTTCTTTGTCCTCCAGGCCATTGGCATCCC
AGGGTGGGGCTTCAGCGGCTGGGTGACTGCTCTGGTGGTGGTGGGATCCAAACCTGCCGTGGCGGTGCTC
ATGCTGCTCGTCGCCCTGCTCTTCACCGGCATCGCAGTGCTGGGAATCGTGATGCTGAAGCGGATCCACT
CCCTGTACCGCCAAACGGGTGCCAGCTTTCAGAAGGCCCAGCAAGAATTTGCTGCTGGTGTCTTCTCCAA
CCCTGCGGTTCGAACTGCTGCTGCCAATGCAGCTGCCGGAGCTGCTGAAAATGCCTTCAGGGCCCCTTGA

Translation (349 aa):
MAQSRDTGNPFPDSGELDNPFQDPAVIQHRPSQQYATLDVYNPFENREPPPAYEPPAPAPAPLPPPSAPS
VQSSRKLSPTEPRNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHVALGGAGTRQNNWPPL
PSFCPVKPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFFACLARFCVDTGSGSGFGLSMLWLLL
FTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDVFFVLQAIGIPGWGFSGWVTALVVVGSKPAVAVL
MLLVALLFTGIAVLGIVMLKRIHSLYRQTGASFQKAQQEFAAGVFSNPAVRTAAANAAAGAAENAFRAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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