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Report for CCDS50965.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50965.1 Public Mus musculus 3 Ubap2l 23 108 98 CCDS HistoryNCBI Gene:74383Re-query CCDS DB by CCDS ID:50965.1Re-query CCDS DB by GeneID:74383See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50965.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000199834.4 ENSMUSP00000143254.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000199834.4Link to Ensembl Protein Viewer:ENSMUSP00000143254.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000199834Re-query CCDS DB by Protein ID:ENSMUSP00000143254
Original member Current member EBI ENSMUST00000195995.4 ENSMUSP00000143638.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000195995.4Link to Ensembl Protein Viewer:ENSMUSP00000143638.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000195995Re-query CCDS DB by Protein ID:ENSMUSP00000143638
Original member Current member NCBI NM_001165985.2 NP_001159457.1 Accepted alive Link to Nucleotide Sequence:NM_001165985.2Link to Protein Sequence:NP_001159457.1Re-query CCDS DB by Nucleotide ID:NM_001165985Re-query CCDS DB by Protein ID:NP_001159457Link to BLAST:NP_001159457.1
Original member Current member NCBI NM_001165986.1 NP_001159458.1 Accepted alive Link to Nucleotide Sequence:NM_001165986.1Link to Protein Sequence:NP_001159458.1Re-query CCDS DB by Nucleotide ID:NM_001165986Re-query CCDS DB by Protein ID:NP_001159458Link to BLAST:NP_001159458.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159457.1 1014 Q80X50-2 1014 100% 0 0
NP_001159458.1 1014 Q80X50-2 1014 100% 0 0

Chromosomal Locations for CCDS 50965.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 90006568 90006617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90008256 90008361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90009110 90009327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90010433 90010514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90012686 90012739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90015130 90015218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90015302 90015497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90016699 90016771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90017115 90017289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90018414 90018468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90019152 90019341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90020897 90021069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90021239 90021516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90023431 90023629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90025063 90025234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90026593 90026678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90028325 90028377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90031311 90031370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90034065 90034177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90034655 90034700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90038370 90038465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90038815 90039016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90043700 90043810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90044854 90044931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90047770 90047859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3045 nt):
ATGATGACGTCGGTGGGCACTAACCGAGCCCGGGGAAACTGGGAACAACCTCAAAACCAAAACCAGACAC
AGCACAAGCAGCGGCCACAGGCCACTGCAGAGCAAATTCGACTTGCACAGATGATTTCGGACCATAATGA
TGCTGACTTTGAGGAGAAGGTGAAACAATTGATTGATATCACAGGCAAAAACCAGGATGAATGTGTGATT
GCTTTGCATGACTGCAATGGAGATGTCAACAGAGCCATCAATGTTCTCCTGGAAGGAAATCCAGACACGC
ATTCCTGGGAGATGGTTGGGAAGAAGAAAGGAGTCTCAGGACAAAAGGATGGTGGACAAACTGAATCTAA
TGAAGAAGGAAAAGAAAATCGAGACCGGGACAGAGACTATAGTCGGCGACGTGGTGGGCCACCAAGACGG
GGGAGAGGTGCCAGCCGTGGACGAGAGTGTATGCATGGGGCTTTATCAAAACCAGCTGTGGTTCGGGGCC
AGGAAAATGGATTGGATGGCACCAAGAGTGGAGGGCCTTCTGGAAGAGGCACAGACAGAGGCAGAAGAGG
CCGTGGCCGTGGCAGAGGTAGTTCTGGTAGGCGAGGAGGAAGGTTTTCTGCTCAAGGAATGGGAACCTTT
AACCCAGCTGATTATGCAGAGCCAGCCAACACTGATGATAACTATGGCAATAGCAGTGGCAATACATGGA
ACAACACTGGCCACTTTGAACCAGATGATGGAACAAGACTTGATTTCATTGGGGTTGAGGGGTCAAATTA
TCCCCGAAAATTTGAGACTGCTCCTGGTGCATGGAGGACTGCAACAGAAGAGTGGGGAACTGAAGACTGG
AATGAAGATCTTTCTGAGACCAAGATCTTTACCGCCTCTAATGTGTCTTCAGTGCCTCTGCCTGCGGAGA
ATGTGACAATCACTGCTGGTCAGAGAATTGACCTTGCTGTTCTGTTGGGGAAGACACCATCTTCAATGGA
GAATGATTCATCTAATCTGGATCCATCTCAGGCTCCTTCCCTGGCTCAGCCTCTGGTGTTTAGTAATTCG
AAGCAGAATGCCATATCACAGCCTGCTTCAGGGAGTACATTTTCTCACCATAGCATGGTGAGCATGTTGG
GGAAAGGATTTGGTGATGTTGGGGAAGCTAAAGGTGGCAGTACAACAGGCTCCCAGTTCTTGGAGCAATT
CAAGACTGCGCAGGCCCTTGCTCAACTGGCAGCTCAACATTCTCAATCTGGAAGCACTACCACCTCCTCT
TGGGATATGGGCTCAACAACACAATCACCATCACTGGTGCAGTATGATCTGAAGAGTGCAAATGATTCAA
CAGTGCACAGTCCTTTTACAAAGCGCCAGGCATTCACCCCATCTTCAACCATGATGGAGGTATTCCTTCA
GGAGAAGCCACCTGCAGTGGCTACCTCGACAGCTGCACCACCTCCCCCGTCTTCTCCTCTGCCAAGCAAA
TCCACCTCGGCTCCACAGATGTCTCCGGGGTCTTCAGACAACCAGTCCTCCAGCCCTCAGCCGGCTCAGC
AGAAACTGAAACAGCAAAAGAAGAAAACCTCCTTGACGTCTAAGATTCCTGCTCTGGCTGTGGAGATGCC
TGGCTCAGCAGATATCTCAGGGCTAAATCTACAGTTTGGGGCATTGCAGTTTGGGTCAGAGCCTGTCCTT
TCTGATTATGAGTCCACCCCCACCACGAGCGCCTCCTCAAGCCAGGCTCCTAGTAGCCTGTATACCAGCA
CGGCCAGTGAGTCTTCATCTACAGTTTCATCTAATCAGAGTCAGGAGTCTGGTTATCAGAGTGGCCCGAT
TCAGTCGACAACTTATACCTCCCAAAATAATGCTCAGGGCCCTCTATATGAACAGAGATCCACACAGACG
CGGCGGTATCCCAGCTCCATCTCTTCATCACCCCAAAAGGACCTGACTCAGGCTAAGAATGGTTTTAGCT
CTGTGCAGGCCACGCAGTTACAGACCACGCAATCTGTTGAAGGTGCTACAGGCTCTGCAGTGAAATCTGA
ATCACCTTCCACTTCTAGTATACCCTCTCTCAATGAAACAGTACCTGCAGCTTCCTTACTGACGACAGCC
AATCAGCATTCATCCTCCTTAAGTGGCTTGAGCCATACGGAGGAGATTCCAAATACCACCACCACACAAC
ATAGCAGTGCATTATCTACACAGCAGAATACCCTTTCTTCATCAACATCTTCTGGGCGTACTTCAACATC
CACTCTTTTGCATACAAGTGTGGAGAGTGAGGCAAATCTACATTCTTCCTCCAGCACCTTCTCTACCACA
TCCAGCACTGTCTCTGCACCTCCCCCAGTGGTCAGTGTCTCCTCCAGTCTGAATAGTGGCAGTAGTCTGG
GCCTTAGCCTGGGCAGCAACTCTACTGTCACAGCCTCAACTCGAAGCTCAGTTGCTACAACTTCAGGAAA
AGCTCCTCCCAACCTTCCTCCTGGAGTCCCGCCATTGTTGCCTAATCCATATATTATGGCTCCGGGGCTG
TTACATGCCTATCCGCCACAAGTATATGGTTATGATGATTTACAGATGCTCCAGACAAGATTTCCATTGG
ATTACTACAGTATCCCGTTTCCCACACCCACCACTCCACTTACTGGGAGGGATGGTAGCCTGGCCAGCAA
CCCTTACTCTGGCGACCTCACCAAATTCGGCCGCGGGGATGCCTCCTCCCCAGCCCCAGCCACAACCTTG
GCCCAACCCCAACAGAACCAGACGCAGACTCACCACACCACGCAGCAGACATTCCTGAACCCGGCGCTGC
CTCCTGGCTATAGTTACACCAGCCTGCCATACTACACAGGGGTCCCGGGCCTCCCCAGCACCTTCCAGTA
TGGGCCTGCTGTGTTCCCTGTGGCTCCTACCTCTTCCAAGCAGCATGGTGTGAATGTCAGTGTGAATGCC
TCGGCTACCCCTTTCCAACAGCCAAGTGGATATGGGTCTCATGGATACAACACTGGAAGAAAATATCCAC
CCCCTTACAAGCATTTCTGGACGGCTGAGAGCTAA

Translation (1014 aa):
MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVI
ALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRR
GRGASRGRECMHGALSKPAVVRGQENGLDGTKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTF
NPADYAEPANTDDNYGNSSGNTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWGTEDW
NEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNS
KQNAISQPASGSTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSS
WDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSK
STSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVL
SDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQT
RRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTA
NQHSSSLSGLSHTEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTT
SSTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGL
LHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTL
AQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNA
SATPFQQPSGYGSHGYNTGRKYPPPYKHFWTAES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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