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Report for CCDS51050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51050.1 Public Mus musculus 3 Fndc7 23 108 98 CCDS HistoryNCBI Gene:320181Re-query CCDS DB by CCDS ID:51050.1Re-query CCDS DB by GeneID:320181See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51050.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053065.7 ENSMUSP00000051172.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053065.7Link to Ensembl Protein Viewer:ENSMUSP00000051172.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000053065Re-query CCDS DB by Protein ID:ENSMUSP00000051172
Original member Current member NCBI NM_001165965.1 NP_001159437.1 Accepted alive Link to Nucleotide Sequence:NM_001165965.1Link to Protein Sequence:NP_001159437.1Re-query CCDS DB by Nucleotide ID:NM_001165965Re-query CCDS DB by Protein ID:NP_001159437Link to BLAST:NP_001159437.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159437.1 651 A2AED3-4 651 100% 0 0

Chromosomal Locations for CCDS 51050.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 108856367 108856410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108858878 108858907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108862727 108862987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108867062 108867316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108869100 108869354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108870528 108870785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108872116 108872370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108881326 108881586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108883372 108883626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108889093 108889111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108889644 108889706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1956 nt):
ATGGCTGGAAGACCTGAGAAGTGTTTTTCTTTGATTAGATTCACTCTCCTCTGTCTGAAAATGGTTATTT
CATCTAAAACAGCTCCTGAAATACCAACTATTGATCAGGCCTATTCAAAAATCAGCAATAGTATCACCGT
AGAATGGACTACCGTGCCAGGGGCCACAAGTTACTTGCTCACAGCTGAAGATGGGAACACAATCATTGAG
ACCACAGTGGCTAATTCCCCAGGGACGGTGACAGGCCTGAAGGCTGCAACCTTGTACCAAATCACCATCA
GATCCATCAGCGCCTCTGGACAAAGCCAGGCATCATCTCCAAAGCAGGCAAAGACAGTGTTGGCTGCCCC
AGTTCTGGAGGTTAGCTCTCCAAGTCCAGACTCAATCCTTGTGAGCTGGGACGCCGTATACATGGCGATC
GGATTCTCCGTGTCTGTTATGCGAGCCAACGGCTTGGGTAGAATTTGGAAAGAGAATACTACAAACACCT
CCCTGACCTTCAGCAGTCTGGATGCCGGAACTCTCTACACTATAAAGGCCTACGCGTGGAATGCCAATGG
AATCCCCGGGGATGACTCCACCCGCAATCAGAGAACCATTGCTTGTGCACCTGGAAGGGTGATGATCCAG
GAAGAGCCCCCTGGTCACTTGTCTGTGGCTTGGTCCAATGTGGAGCTGGGTGACTATTATGTGGCTTTCG
TGAAGAGTGATGACGGCTTGGAGGTACACTGCAATACCTCCCTCACCCAGTGCAACTTCTTGTCTGAGTG
TGGCTTCACGTACTTCATTAGTGTGTTTGCCTATAACAAGGCAGGGCAGAGTCCTCTGGGCGATGTATTC
AATTACACTACAGCTCCGTGTTGTCCTAATGACATTAGCCCAGTGTTGGTGTCCAGTGACAGGGTGGAAA
TTGCCTGGTCTCCTGTGCGTGGTGCTGAACTCTATGAAACCAAGGCCATAGCTGGGTATAGCATTGTGGA
GTGCAACGACACCGCTCCTGCTTGCACTCTCTCTGCCTTGGATTGTGACACCAAGTACAACGTCACAGTG
TATTCCTTCAGTGAGGTCCGAGGCAGCAATCTGTCATGCTCTTCCCACTTTATCACCACAGCTCCTTGCA
GTCCTGAAATAAAAAATATTTCGAAGGATGCATTCTCCATGATCAATGTGCACTGGCGGTCGACTAATGA
AGGCGCCACTTACACGGTGACGGCCCAGGGCAAGAAGGGGCTGTTCCAGTGCAGCAGCACCGGGGAGACC
TGCAGGATGGGGGGCCTGCCCTGCGGCTCCATGTTCTCTGTCACTGCTGTGGCCGAGACTCAGGCGGGAA
AGAGCCTGCCCAGCTACAGCGTGCCCCTGGAAACAGTGCCCTGCTGTCCAGCTGGTCTGACAGCAGCTCA
GGTCACCCAGTCTATAATCAACGTGAGCTGGACTGCTGGGGCAGTGGCTCAAACCTATGCTGCAGTGCTG
GAGTCATACATCGGACAGTCTAAGTGTCACACCCATCAAAACCACTGCCTTCTGGGATGCATCACATGTG
GCATCAACTACACGGTGGCGTTAAAAGCCATTAGTTCCACGGGACTGACTGCAGATTGTGCCTATCAAAG
TTACTCTTCTAGTGTCTGTTGCCCACTGGGGGTCAAATTATATAGGCTGGGCCCTAATGGCATCCGGATC
TACTGGCGAGCCTCCAGGGGCGCTGCCAATTATAGCACCGACCTCTATGGTTCCAAAGGCATCTTTACAT
GTGCCCCACATGCCGGTCTAAGTTTCTGTGACATCACCAACATCCCCTGTGGGGACGTTTACACCGTGAT
GGTCTCACCAGTTGCTGAAACAGGACTGAAGCTTACTTTCTGCCCAAAAAAAATATACTCAGTTACCTGT
TCTGGCAGTACTCTTGGAATGGTGATTTACAGAGGGAAGAGGAACGATACAGCGAGCCCCAGGTAA

Translation (651 aa):
MAGRPEKCFSLIRFTLLCLKMVISSKTAPEIPTIDQAYSKISNSITVEWTTVPGATSYLLTAEDGNTIIE
TTVANSPGTVTGLKAATLYQITIRSISASGQSQASSPKQAKTVLAAPVLEVSSPSPDSILVSWDAVYMAI
GFSVSVMRANGLGRIWKENTTNTSLTFSSLDAGTLYTIKAYAWNANGIPGDDSTRNQRTIACAPGRVMIQ
EEPPGHLSVAWSNVELGDYYVAFVKSDDGLEVHCNTSLTQCNFLSECGFTYFISVFAYNKAGQSPLGDVF
NYTTAPCCPNDISPVLVSSDRVEIAWSPVRGAELYETKAIAGYSIVECNDTAPACTLSALDCDTKYNVTV
YSFSEVRGSNLSCSSHFITTAPCSPEIKNISKDAFSMINVHWRSTNEGATYTVTAQGKKGLFQCSSTGET
CRMGGLPCGSMFSVTAVAETQAGKSLPSYSVPLETVPCCPAGLTAAQVTQSIINVSWTAGAVAQTYAAVL
ESYIGQSKCHTHQNHCLLGCITCGINYTVALKAISSTGLTADCAYQSYSSSVCCPLGVKLYRLGPNGIRI
YWRASRGAANYSTDLYGSKGIFTCAPHAGLSFCDITNIPCGDVYTVMVSPVAETGLKLTFCPKKIYSVTC
SGSTLGMVIYRGKRNDTASPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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