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Report for CCDS51124.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51124.1 Public Mus musculus 4 Runx1t1 23 108 98 CCDS HistoryNCBI Gene:12395Re-query CCDS DB by CCDS ID:51124.1Re-query CCDS DB by GeneID:12395See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51124.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006761.9 ENSMUSP00000006761.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006761.9Link to Ensembl Protein Viewer:ENSMUSP00000006761.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000006761Re-query CCDS DB by Protein ID:ENSMUSP00000006761
Original member Current member NCBI NM_001111026.2 NP_001104496.1 Accepted alive Link to Nucleotide Sequence:NM_001111026.2Link to Protein Sequence:NP_001104496.1Re-query CCDS DB by Nucleotide ID:NM_001111026Re-query CCDS DB by Protein ID:NP_001104496Link to BLAST:NP_001104496.1

Chromosomal Locations for CCDS 51124.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 13743702 13743729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13835633 13835770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13837760 13838001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13841798 13841887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13846776 13846957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13859811 13860061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13865201 13865286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13865831 13866032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13875477 13875545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13881050 13881240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13889612 13889887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1755 nt):
ATGGTGGGACTCTCCAGCCCTGTGCAGTATCGTACCGAGAAGCACTCCACAATGCCAGACTCACCTGTGG
ATGTGAAGACGCAGTCTAGGCTGACTCCCCCAGCAATGCCACCTCCTCCAACCACTCAAGGAGCTCCAAG
AACCAGCTCATTTACGCCAACGACATTAACGAATGGCACCAGCCATTCACCCACGGCCTTGAATGGCGCT
CCCTCACCGCCTAATGGCTTTAGCAACGGGCCTTCTTCTTCCTCTTCCTCTTCTCTGGCTAATCAGCAGC
TGCCCCCAGCCTGTGGTGCTAGGCAACTCAGCAAGCTGAAACGATTTCTTACTACCCTGCAGCAGTTTGG
CAATGACATTTCACCAGAGATTGGAGAAAGAGTTCGCACCCTTGTACTGGGACTGGTGAACTCTACTTTG
ACAATTGAAGAATTTCATTCCAAACTGCAAGAAGCTACTAACTTCCCACTGAGACCTTTTGTCATCCCGT
TTTTGAAGGCCAACCTGCCCCTGCTCCAGCGTGAACTCCTCCACTGCGCAAGGCTAGCCAAACAGAACCC
TGCCCAGTACCTCGCTCAGCACGAACAGCTGCTTCTGGATGCCAGCACCACCTCCCCTGTCGACTCCTCA
GAGCTGCTTCTCGACGTGAACGAAAACGGGAAGAGGCGAACTCCAGACAGAACCAAAGAAAATGGCTTTG
ACAGAGAGCCTTTGCACTCAGAACATCCAAGCAAGCGACCATGCACTATTAGCCCAGGCCAGCGGTACAG
TCCAAATAATGGCTTATCCTACCAGCCAAATGGCCTGCCTCACCCCACCCCACCTCCACCTCAGCATTAC
CGATTGGATGATATGGCCATTGCCCACCACTACAGGGACTCCTATCGACACCCCAGCCACAGGGACCTCA
GGGACAGAAATAGACCTATGGGGTTACATGGCACACGTCAAGAAGAAATGATTGACCACAGACTAACAGA
CAGAGAATGGGCAGAAGAGTGGAAACATCTCGATCATCTGTTAAACTGCATCATGGACATGGTGGAGAAG
ACAAGACGATCCCTCACTGTACTAAGACGATGTCAGGAAGCGGACCGGGAAGAACTGAATTACTGGATAC
GGCGGTACAGTGATGCTGAGGACTTAAAAAAGGGTGGCAGCAGTAGCAGCAGCCACTCCAGGCAGCAGAG
TCCTGTCAATCCAGACCCAGTCGCATTAGATGCACATCGGGAATTCCTTCACAGGCCTGCGTCTGGATAC
GTGCCAGAGGAGATCTGGAAGAAAGCTGAGGAAGCTGTGAATGAGGTGAAGCGACAGGCAATGACGGAGC
TGCAAAAAGCCGTGTCTGAGGCAGAGAGGAAAGCCCATGACATGATCACCACGGAGCGAGCCAAGATGGA
ACGCACGGTGGCTGAAGCGAAGAGGCAGGCAGCAGAAGATGCTCTAGCAGTCATCAACCAGCAGGAAGAC
TCCAGTGAGAGTTGCTGGAACTGTGGCCGGAAAGCAAGTGAGACGTGCAGCGGCTGTAACACGGCCCGAT
ACTGTGGCTCTTTTTGCCAGCATAAAGACTGGGAGAAGCATCACCACATCTGTGGACAGACCCTGCAGGC
CCCACAGCAGGGAGACACGCCCGCTGTCAGCTCCTCAGTCACACCCAGCAGTGGGGCTGGGAGCCCAATG
GACACACCACCAGCAGCCACTCCGAGGTCTACCACCCCGGGAACCCCCTCTACCATAGAGACGACGCCTC
GCTAG

Translation (584 aa):
MVGLSSPVQYRTEKHSTMPDSPVDVKTQSRLTPPAMPPPPTTQGAPRTSSFTPTTLTNGTSHSPTALNGA
PSPPNGFSNGPSSSSSSSLANQQLPPACGARQLSKLKRFLTTLQQFGNDISPEIGERVRTLVLGLVNSTL
TIEEFHSKLQEATNFPLRPFVIPFLKANLPLLQRELLHCARLAKQNPAQYLAQHEQLLLDASTTSPVDSS
ELLLDVNENGKRRTPDRTKENGFDREPLHSEHPSKRPCTISPGQRYSPNNGLSYQPNGLPHPTPPPPQHY
RLDDMAIAHHYRDSYRHPSHRDLRDRNRPMGLHGTRQEEMIDHRLTDREWAEEWKHLDHLLNCIMDMVEK
TRRSLTVLRRCQEADREELNYWIRRYSDAEDLKKGGSSSSSHSRQQSPVNPDPVALDAHREFLHRPASGY
VPEEIWKKAEEAVNEVKRQAMTELQKAVSEAERKAHDMITTERAKMERTVAEAKRQAAEDALAVINQQED
SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAPQQGDTPAVSSSVTPSSGAGSPM
DTPPAATPRSTTPGTPSTIETTPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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