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Report for CCDS51125.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51125.1 Public Mus musculus 4 Runx1t1 23 108 98 CCDS HistoryNCBI Gene:12395Re-query CCDS DB by CCDS ID:51125.1Re-query CCDS DB by GeneID:12395See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51125.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098257.9 ENSMUSP00000095857.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098257.9Link to Ensembl Protein Viewer:ENSMUSP00000095857.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098257Re-query CCDS DB by Protein ID:ENSMUSP00000095857
Original member Current member EBI ENSMUST00000105566.8 ENSMUSP00000127109.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105566.8Link to Ensembl Protein Viewer:ENSMUSP00000127109.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105566Re-query CCDS DB by Protein ID:ENSMUSP00000127109
Original member Current member NCBI NM_001111027.2 NP_001104497.1 Accepted alive Link to Nucleotide Sequence:NM_001111027.2Link to Protein Sequence:NP_001104497.1Re-query CCDS DB by Nucleotide ID:NM_001111027Re-query CCDS DB by Protein ID:NP_001104497Link to BLAST:NP_001104497.1

Chromosomal Locations for CCDS 51125.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 13771458 13771545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13835633 13835770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13837760 13838001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13841798 13841887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13846776 13846957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13859811 13860061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13865201 13865286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13865831 13866032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13875477 13875545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13881050 13881240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13889612 13889887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1815 nt):
ATGATATCTGTCAAAAGAAACACTTGGAGAGCACTGAGTGTAGTGATAGGTGACTGCCGGAAAAAGGCGA
ACTTTGAATATTGTCAAGATCGTACCGAGAAGCACTCCACAATGCCAGACTCACCTGTGGATGTGAAGAC
GCAGTCTAGGCTGACTCCCCCAGCAATGCCACCTCCTCCAACCACTCAAGGAGCTCCAAGAACCAGCTCA
TTTACGCCAACGACATTAACGAATGGCACCAGCCATTCACCCACGGCCTTGAATGGCGCTCCCTCACCGC
CTAATGGCTTTAGCAACGGGCCTTCTTCTTCCTCTTCCTCTTCTCTGGCTAATCAGCAGCTGCCCCCAGC
CTGTGGTGCTAGGCAACTCAGCAAGCTGAAACGATTTCTTACTACCCTGCAGCAGTTTGGCAATGACATT
TCACCAGAGATTGGAGAAAGAGTTCGCACCCTTGTACTGGGACTGGTGAACTCTACTTTGACAATTGAAG
AATTTCATTCCAAACTGCAAGAAGCTACTAACTTCCCACTGAGACCTTTTGTCATCCCGTTTTTGAAGGC
CAACCTGCCCCTGCTCCAGCGTGAACTCCTCCACTGCGCAAGGCTAGCCAAACAGAACCCTGCCCAGTAC
CTCGCTCAGCACGAACAGCTGCTTCTGGATGCCAGCACCACCTCCCCTGTCGACTCCTCAGAGCTGCTTC
TCGACGTGAACGAAAACGGGAAGAGGCGAACTCCAGACAGAACCAAAGAAAATGGCTTTGACAGAGAGCC
TTTGCACTCAGAACATCCAAGCAAGCGACCATGCACTATTAGCCCAGGCCAGCGGTACAGTCCAAATAAT
GGCTTATCCTACCAGCCAAATGGCCTGCCTCACCCCACCCCACCTCCACCTCAGCATTACCGATTGGATG
ATATGGCCATTGCCCACCACTACAGGGACTCCTATCGACACCCCAGCCACAGGGACCTCAGGGACAGAAA
TAGACCTATGGGGTTACATGGCACACGTCAAGAAGAAATGATTGACCACAGACTAACAGACAGAGAATGG
GCAGAAGAGTGGAAACATCTCGATCATCTGTTAAACTGCATCATGGACATGGTGGAGAAGACAAGACGAT
CCCTCACTGTACTAAGACGATGTCAGGAAGCGGACCGGGAAGAACTGAATTACTGGATACGGCGGTACAG
TGATGCTGAGGACTTAAAAAAGGGTGGCAGCAGTAGCAGCAGCCACTCCAGGCAGCAGAGTCCTGTCAAT
CCAGACCCAGTCGCATTAGATGCACATCGGGAATTCCTTCACAGGCCTGCGTCTGGATACGTGCCAGAGG
AGATCTGGAAGAAAGCTGAGGAAGCTGTGAATGAGGTGAAGCGACAGGCAATGACGGAGCTGCAAAAAGC
CGTGTCTGAGGCAGAGAGGAAAGCCCATGACATGATCACCACGGAGCGAGCCAAGATGGAACGCACGGTG
GCTGAAGCGAAGAGGCAGGCAGCAGAAGATGCTCTAGCAGTCATCAACCAGCAGGAAGACTCCAGTGAGA
GTTGCTGGAACTGTGGCCGGAAAGCAAGTGAGACGTGCAGCGGCTGTAACACGGCCCGATACTGTGGCTC
TTTTTGCCAGCATAAAGACTGGGAGAAGCATCACCACATCTGTGGACAGACCCTGCAGGCCCCACAGCAG
GGAGACACGCCCGCTGTCAGCTCCTCAGTCACACCCAGCAGTGGGGCTGGGAGCCCAATGGACACACCAC
CAGCAGCCACTCCGAGGTCTACCACCCCGGGAACCCCCTCTACCATAGAGACGACGCCTCGCTAG

Translation (604 aa):
MISVKRNTWRALSVVIGDCRKKANFEYCQDRTEKHSTMPDSPVDVKTQSRLTPPAMPPPPTTQGAPRTSS
FTPTTLTNGTSHSPTALNGAPSPPNGFSNGPSSSSSSSLANQQLPPACGARQLSKLKRFLTTLQQFGNDI
SPEIGERVRTLVLGLVNSTLTIEEFHSKLQEATNFPLRPFVIPFLKANLPLLQRELLHCARLAKQNPAQY
LAQHEQLLLDASTTSPVDSSELLLDVNENGKRRTPDRTKENGFDREPLHSEHPSKRPCTISPGQRYSPNN
GLSYQPNGLPHPTPPPPQHYRLDDMAIAHHYRDSYRHPSHRDLRDRNRPMGLHGTRQEEMIDHRLTDREW
AEEWKHLDHLLNCIMDMVEKTRRSLTVLRRCQEADREELNYWIRRYSDAEDLKKGGSSSSSHSRQQSPVN
PDPVALDAHREFLHRPASGYVPEEIWKKAEEAVNEVKRQAMTELQKAVSEAERKAHDMITTERAKMERTV
AEAKRQAAEDALAVINQQEDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAPQQ
GDTPAVSSSVTPSSGAGSPMDTPPAATPRSTTPGTPSTIETTPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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