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Report for CCDS51180.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51180.1 Public Mus musculus 4 Epb41l4b 23 108 98 CCDS HistoryNCBI Gene:54357Re-query CCDS DB by CCDS ID:51180.1Re-query CCDS DB by GeneID:54357See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51180.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030142.3 ENSMUSP00000030142.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030142.3Link to Ensembl Protein Viewer:ENSMUSP00000030142.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000030142Re-query CCDS DB by Protein ID:ENSMUSP00000030142
Original member NCBI NM_019427.2 NP_062300.2 Updated not alive Link to Nucleotide Sequence:NM_019427.2Link to Protein Sequence:NP_062300.2Re-query CCDS DB by Nucleotide ID:NM_019427Re-query CCDS DB by Protein ID:NP_062300
Current member NCBI NM_019427.3 NP_062300.2 Accepted alive Link to Nucleotide Sequence:NM_019427.3Link to Protein Sequence:NP_062300.2Re-query CCDS DB by Nucleotide ID:NM_019427Re-query CCDS DB by Protein ID:NP_062300Link to BLAST:NP_062300.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062300.2 527 Q9JMC8 527 100% 0 0

Chromosomal Locations for CCDS 51180.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 57063105 57063279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57064799 57064863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57068305 57068338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57071052 57071082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57073262 57073371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57076291 57076460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57076534 57076603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57076914 57077002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57077164 57077251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57078875 57078995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57084023 57084075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57085996 57086040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57087986 57088064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57088802 57088844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57103424 57103528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57142848 57143153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1584 nt):
ATGCTGCGGTTCCTGCGCCGGACCTTTGGCCGCCGCTCCATGCAGCGCTACGCGCGGGGCGCGGCGGGGC
GCGGGGCCGCCGGGCTGGGGGACGAGCGCGACGGGGGGCCGCGAGGGGGCCCGGCTGCCGCCGCCAGCTC
CTCGGTGCTGCCCGCCGCGCCCGGGGGCAGCGTATTCCCGGCCGGCGGCGGGCCCCTGCTCACCGGCGGC
GCGGCTGTGCACATCTCCGCCTCGGGAGCTGCCAAGGCCACCCTTTACTGCCGTGTCTTCCTGCTCGACG
GAACCGAAGTGAGCGTGGACCTGCCGAAACATGCCAAAGGCCAGGATTTGTTCGACCAGATTGTGTACCA
CTTGGACCTGGTGGAAACAGATTATTTTGGTCTGCAGTTCCTCGACTCTGCCCAGGTCACGCACTGGCTG
GATCACGCGAAACCCATAAAGAAACAGATGAAAGTGGGACCTGCCTATGCCTTGCACTTTCGAGTCAAAT
ACTATTCTTCAGAACCAAACAACCTTCGAGAGGAATTTACAAGGTACCTGTTTGTTTTACAACTCAGGCA
TGACATTCTTTCTGGAAAATTGAAGTGCCCCTATGAAACGGCCGTGGAACTAGCTGCCCTCTGTCTGCAA
GCGGAGCTAGGAGAGTGTGAGCTCCCGGAACACACGCCCGAGCTTGTGTCTGAGTTTCGGTTCATCCCAA
ATCAGACAGAAGCCATGGAGTTCGATATCTTCCAGAGATGGAAAGAGTACAGGGGAAAGAGCCCTGCCCA
GGCGGAACTCTCCTATCTGAACAAAGCGAAGTGGCTGGAAATGTATGGAGTGGACATGCATGTTGTCAGG
GGAAGAGATGGCTGTGAATATTCTCTTGGACTGACCCCGACAGGCATATTAATCTTTGAAGGAGCTAACA
AAATAGGCTTATTCTTTTGGCCTAAGATCACCAAAATGGACTTTAAAAAGAGTAAACTGACCCTCGTAGT
AGTGGAAGATGATGACCAGGGGCGTGAGCAAGAGCACACCTTCGTGTTCAGGCTGGACAGTGCGCGTACC
TGCAAGCACTTGTGGAAGTGTGCAGTGGAGCACCATGCCTTCTTCCGTCTGCGCACACCCAGCAACAGCA
AGTCCGCCAGATCTGACTTCATCCGGCTGGGTTCCCGCTTCCGGTTCAGTGGACGGACGGAATATCAAGC
TACACACGGCTCCAGATTGCGAAGAACCAGCACCTTTGAGAGGAAGCCTAGCAAACGTTACCCGTCCCGG
CGACATTCCACATTCAAAGCGAGCAACCCAGTAATTGCTGCTCAGCTCTGCTCTAAAGCAAATCCTGAAG
TCCACAATTACCAGCCTCAGTACCATCCTGACGTCCACCCCAGCCAGCCCCGGTGGCGCCCTCACTCTCC
AAATGTCAGTAACCATTCCATCTGCAAACAAAACAAGCCATGTTTTCAGGATGACAGGCCACACTGGAAA
ACCTCAGCCAGTGGAGATGGCAGCCACTTTGACTATGTCCAGGACCAGAACCAGAGGAACTTAGGAGGGG
CGTACAGTGTCACGTACCGGGACAAACTCATGACCGCACTTTGA

Translation (527 aa):
MLRFLRRTFGRRSMQRYARGAAGRGAAGLGDERDGGPRGGPAAAASSSVLPAAPGGSVFPAGGGPLLTGG
AAVHISASGAAKATLYCRVFLLDGTEVSVDLPKHAKGQDLFDQIVYHLDLVETDYFGLQFLDSAQVTHWL
DHAKPIKKQMKVGPAYALHFRVKYYSSEPNNLREEFTRYLFVLQLRHDILSGKLKCPYETAVELAALCLQ
AELGECELPEHTPELVSEFRFIPNQTEAMEFDIFQRWKEYRGKSPAQAELSYLNKAKWLEMYGVDMHVVR
GRDGCEYSLGLTPTGILIFEGANKIGLFFWPKITKMDFKKSKLTLVVVEDDDQGREQEHTFVFRLDSART
CKHLWKCAVEHHAFFRLRTPSNSKSARSDFIRLGSRFRFSGRTEYQATHGSRLRRTSTFERKPSKRYPSR
RHSTFKASNPVIAAQLCSKANPEVHNYQPQYHPDVHPSQPRWRPHSPNVSNHSICKQNKPCFQDDRPHWK
TSASGDGSHFDYVQDQNQRNLGGAYSVTYRDKLMTAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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