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Report for CCDS51232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51232.1 Public Mus musculus 4 Ift74 23 108 98 CCDS HistoryNCBI Gene:67694Re-query CCDS DB by CCDS ID:51232.1Re-query CCDS DB by GeneID:67694See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51232.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030311.10 ENSMUSP00000030311.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030311.10Link to Ensembl Protein Viewer:ENSMUSP00000030311.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030311Re-query CCDS DB by Protein ID:ENSMUSP00000030311
Original member Current member NCBI NM_026319.3 NP_080595.2 Accepted alive Link to Nucleotide Sequence:NM_026319.3Link to Protein Sequence:NP_080595.2Re-query CCDS DB by Nucleotide ID:NM_026319Re-query CCDS DB by Protein ID:NP_080595Link to BLAST:NP_080595.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080595.2 600 Q8BKE9 600 100% 0 0

Chromosomal Locations for CCDS 51232.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 94617982 94618101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94621854 94621989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94624731 94624779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94626977 94627075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94627252 94627312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94632677 94632736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94635774 94635835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94652927 94653065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94654829 94654891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94658507 94658650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94660948 94660988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94662587 94662666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94678265 94678318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94679180 94679277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94679934 94680060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94685622 94685785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94686811 94686936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94691720 94691780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94692951 94693069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1803 nt):
ATGGCCAGTAATCACAAATCTTCAGCCCCTCGCCCTATTTCTCGGGGTGGAATAGGACTAACAGGAAGGC
CTCCTTCTGGAATAAGACCTCCATCTGGCAATGTTCGAGTGGCAACTGCAATGCCACCAACAACAGCAAG
ACCAGGTTCTCGTGGTGGTCCCTTAGGGACTGGTGGAGTTTTGTCATCTCAAATCAAAGTTGCTGATCGT
CCTGTGACCCAACAAGGTTTGAGTGGAATGAAGACTGGCATGAAAGGTCCCCAGAGGCAAATTTTAGACA
AATCTTACTATCTTGGACTTCTTAGGAGCAAAATAAGTGAACTTACAACTGAAATTAATAAGCTTCAGAA
AGAAATAGAAATGTACAACCAAGAAAATTCAGTGTATTTGTCATATGAAAAGAGGGCAGAGACATTAGCT
GTTGAAATTAAAGACTTTCAAGGACAACTAGCAGACTACAACATGTTGGTAGATAAACTTAATACCAATA
CTGAAATGGAAGAAGTAATGAGTGATTACAACATGCTTAAAGCTCAAAATGACAGAGAAACACAAAGTAT
GGATGTCATATTTACTGAAAGACAAGCGAAGGAAAAACAAATCAGAAGTGTAGAAGAAGAAGTTGAACAA
GAAAAGCAAGCAGCAGATGGCATTATCAAAAATATGTCTCCTGAAAAACAAGTCAAGTACATAGAAATGA
AAACCACAAATGAGAAACTGTTGCAGGAATTAGATACACTTCAGCAACAGCTAGATTCTCTGAACATGAA
AAAGGAGAGCCTAGAAACTGAAATAGCACACTCCCAAGTAAAACAAGAGGCTGTATTGCTGTATGAAAAA
CTTTATGAGTTAGAGTCCCATCGAGATCAAATGATTGCAGAAGACAAAAGCATGGGATCGCCAATGGAGG
AAAGGGAGAGATTGCTTAAGCAGGTTAAAGAAGATAATCAGGAAATAGCCAGCATGGAGAGACAGTTAAC
AGATATAAAAGAAAAAATAAACCAATTTAGTGAAGAAATTAGACAACTTGACATGGATTTAGAGGAGCAC
CAAGGTGAAATGAATCAAAAATACAAGGAGCTTAAAAAAAGGGAGGAAAATATGGATGCTTTTATAGAGA
CTTTTGAGGAAACGAAGAATCAGGAACTAGAGCGGAAGGCACAGATAGAAGCCAGCATCATCACACTGTT
AGAGCATTGCAGTCGGAATATAAATCGTATGAAGCAGATATCCTCCATCACCAACCAAGAGCTGAAGATG
ATGCAGGATGACCTCAGCTTTAAATCAACTGAGATGCAGAAGTCACAGACAACAGCTAGGAATTTGACCT
CAGACAGTCAGCGTCTGCAGCTGGATCTACAGAAAATGGAACTTCTGGAAAGTAAGATGACAGAAGAGCA
ACAGTCTCTGAAAAACAAAATTAAGCAAATGACTGCTGACCTGGAGACATACAGTGACCTGGCAGCTTTA
AAATCATCAGCTGAAGAAAAGAAGAAGAAATTGCATCAAGAAAGAACAGTATTGTCAACTCACAGAAATG
CCTTTAAGAAAATAATGGAGAAGCTGACCTCAGATTATGATACCCTTAAAAGGCAACTTCAAGACAATGA
GACACATGCTCAGCTTACAAATTTGGAGAGGAAGTGGCAGCACCTGGAGCAAAATAACTTCGTAATGAAA
GAGTTCATAGCAACCAAGAGTCAAGAGAGTGATTACCAGCCGGTGATTAAAAATGTGATGAAGCAGATTG
CAGAGTATAATAAAACCATCATGGATGCTCTACATAATGCCAGCAGAAGCTGA

Translation (600 aa):
MASNHKSSAPRPISRGGIGLTGRPPSGIRPPSGNVRVATAMPPTTARPGSRGGPLGTGGVLSSQIKVADR
PVTQQGLSGMKTGMKGPQRQILDKSYYLGLLRSKISELTTEINKLQKEIEMYNQENSVYLSYEKRAETLA
VEIKDFQGQLADYNMLVDKLNTNTEMEEVMSDYNMLKAQNDRETQSMDVIFTERQAKEKQIRSVEEEVEQ
EKQAADGIIKNMSPEKQVKYIEMKTTNEKLLQELDTLQQQLDSLNMKKESLETEIAHSQVKQEAVLLYEK
LYELESHRDQMIAEDKSMGSPMEERERLLKQVKEDNQEIASMERQLTDIKEKINQFSEEIRQLDMDLEEH
QGEMNQKYKELKKREENMDAFIETFEETKNQELERKAQIEASIITLLEHCSRNINRMKQISSITNQELKM
MQDDLSFKSTEMQKSQTTARNLTSDSQRLQLDLQKMELLESKMTEEQQSLKNKIKQMTADLETYSDLAAL
KSSAEEKKKKLHQERTVLSTHRNAFKKIMEKLTSDYDTLKRQLQDNETHAQLTNLERKWQHLEQNNFVMK
EFIATKSQESDYQPVIKNVMKQIAEYNKTIMDALHNASRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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