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Report for CCDS51328.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51328.1 Public Mus musculus 4 Rsrp1 23 108 98 CCDS HistoryNCBI Gene:27981Re-query CCDS DB by CCDS ID:51328.1Re-query CCDS DB by GeneID:27981See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51328.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078084.6 ENSMUSP00000077226.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078084.6Link to Ensembl Protein Viewer:ENSMUSP00000077226.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000078084Re-query CCDS DB by Protein ID:ENSMUSP00000077226
Original member Current member NCBI NM_023665.3 NP_076154.3 Accepted alive Link to Nucleotide Sequence:NM_023665.3Link to Protein Sequence:NP_076154.3Re-query CCDS DB by Nucleotide ID:NM_023665Re-query CCDS DB by Protein ID:NP_076154Link to BLAST:NP_076154.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076154.3 298 Q3UC65-1 298 100% 0 0

Chromosomal Locations for CCDS 51328.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 134923927 134924482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134925293 134925432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134926735 134926818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134926931 134927047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGTCCTCGGCCGCCATGTCTAAATACGTGAACGACATGTGGCCCGGCTCTCCGCAGGAGAAAGCCTCGC
CG
TCCACCTCGGGCTCGGGCCGCTCCAGCCGCCTGTCGTCGCGCTCCCGCAGCCGCTCTTCGTCCCGCAG
C
TCCCGACGCGACTCCCGCAGCTCTAGCCGCTCGTCCTCGCGCAGCCACAGCCGGCCGCGGAGGAGCAGA
CGG
TCCCGATCCCGGTCCCGCAGGCGCCACCAGCGCAAGTACAGGCGCTACTCACGCTCGTACTCACGCA
GC
CGGTCGCGCTCCCGCAGCCACCGCTATCACCGCGACAGCCGTTACGAGCGGCCGCGGAGGTACTACAA
G
TCGCCGTCGCCCTACCGCTCCCGGAGCAGGTCGCGCTCCCGCGGGAGGTCGCAGCACCGGTGGTCGTAC
TAC
GCGATCACTAGAGGGCGGCGCTACTACGGCTTCGGCCGGACGGTGTACCCCGAGGATCGCCCCAGGT
GG
AGGGAAAGATCCAGAACCAGGTCGCGCAGCAGGAGTAGAACCCCATTTCGCCTGAGTGAGAAAGATCG
A
ATGGAGCTACTAGAAATAGCAAAAGCCAACGCAGCAAAAGCTCTGGGAACAGCCAACTTCGACTTGCCA
GCA
AGTCTCCGAGCCAAGGAGGCAAGCCAGGGGACAGCTGTTTCCAGCAGTGGGCCAAAGGTGGAGCATT
CA
GAAAAGCAGACTGAAGATGCAACTAAAAATACCAGTGAAAAGTCTTCTACACAAAGAAACATAGCCTT
C
AGCTCCAATAATTCCGTAGCAAAGCCACTGCAGAAAACAACTAAAGCTGCTGTTGAAGAGAAGTCTTCA
GGA
TCACCAAAAATAGATAAGAAAAAAAGTCCTTACGGACTGTGGATACCTGTCTAA


Translation (298 aa):
MSSAAMSKYVNDMWPGSPQEKASPSTSGSGRSSRLSSRSRSRSSSRSSRRDSRSSSRSSSRSHSRPRRSR
R
SRSRSRRRHQRKYRRYSRSYSRSRSRSRSHRYHRDSRYERPRRYYKSPSPYRSRSRSRSRGRSQHRWSY
Y
AITRGRRYYGFGRTVYPEDRPRWRERSRTRSRSRSRTPFRLSEK
DRMELLEIAKANAAKALGTANFDLP
A
SLRAKEASQGTAVSSSGPKVE
HSEKQTEDATKNTSEKSSTQRNIAFSSNNSVAKPLQKTTKAAVEEKSS
G
SPKIDKKKSPYGLWIPV




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser