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Report for CCDS51379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51379.1 Public Mus musculus 4 Casz1 23 108 98 CCDS HistoryNCBI Gene:69743Re-query CCDS DB by CCDS ID:51379.1Re-query CCDS DB by GeneID:69743See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51379.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122222.7 ENSMUSP00000112978.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122222.7Link to Ensembl Protein Viewer:ENSMUSP00000112978.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122222Re-query CCDS DB by Protein ID:ENSMUSP00000112978
Original member Current member NCBI NM_001159344.1 NP_001152816.1 Accepted alive Link to Nucleotide Sequence:NM_001159344.1Link to Protein Sequence:NP_001152816.1Re-query CCDS DB by Nucleotide ID:NM_001159344Re-query CCDS DB by Protein ID:NP_001152816Link to BLAST:NP_001152816.1

Chromosomal Locations for CCDS 51379.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 148901728 148901743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148928997 148929482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148932758 148933592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148934581 148934649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148936166 148936256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148936959 148937123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148938141 148938313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148938475 148939322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148941282 148941414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148941667 148941730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148942903 148943057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148943203 148943325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148944258 148944596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148946023 148946221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148946990 148947161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148948524 148948675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148948793 148948934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148951445 148952571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5289 nt):
ATGGATCTTGGAACAGCTGAAAGCACCCGGTGCACCGACCCACCTGCAGGCAAGCCTCCAATGGCAGCCA
AGCGCAAAGGCGGCCTGAAGCTCAACGCCATCTGTGCCAAGCTCAGCCGACAGGTGGTCGTGGAGAAGGG
AGCAGAGGCCGGCTCCCAAGCCGAAGGTAGCCCACTACATCCCCGGGACAAAGAGCGCAGTGGCCCTGAG
TCTGGGGTGAGCCGGGCTCCCCGAAGTGAAGAAGACAAGAGGCGGGCAGTGATCGAGAAATGGGTCAATG
GAGAGTACTGTGAGGATCCCGCACCCACCCCAGTGTTGGGGCGTATTGCCCGTGATCAGGAGCTGCCCCC
AGAGGGTGTCTACATGGTCCAGCCACAGGGCTGCAGTGACGAAGAAGACCATGCAGAAGAGCCCTCAAAA
GATAACAGTGTCCTGGAGGAGAAGGAGTCAGATGGTACGGCTTCTAAAGATGACAGCGGCCCCAGCACCA
GGCAGGCTTCAGGAGAAACCTCCTCTCTGAGGGACTACGCTGCTTCCACCATGACCGAGTTCCTCGGCAT
GTTTGGCTACGATGACCAGAACACCAGGGATGAGCTGGCCAAGAAGATCAGCTTTGAGAAGCCGCATGCA
GGCTCCACCCCCGAGGTGGCTGCCTCTTCCATGTTGCCCTCCTCTGAGGATACCCTCAGCAAGCGGGCGC
GCTTCTCCAAATACGAGGAATACATCCGTAAGCTCAAGGCCGGCGAGCAACTTCCCTGGCCAGCCCACGG
GAGCAAAGCCGAGGACCGGGCAGGCAAGGAGGTGGTGGGTCCCTTACCCAGCCTACGGCTGCCCAGCAAC
ACGGCCCACCTGGAAACCAAGGCCACCATCCTGCCACTGCCATCACACAGCAGTGTCCAGATGCAGAATC
TGGTAGCTCGTGCTTCCAAGTATGACTTCTTCATCCACAAACTGAAGACAGGCGAGAACCTGAGGCCCCA
GAATGGAAGCACTTACAAGAAGCCATCCAAGTATGACCTGGAGAATGTCAAGTACTTGCACCTCTTCAAA
CCCGGGGAAGGCAGCCCTGACATGGGCGGGGCCATCGCCTTCAAGACAGGCAAGGTGGGGCGCCCCTCTA
AGTACGACGTTCGGGGCATCCAGAAGCCAGGCCCTACCAAGATTCCGCCCGCCCCCAGCCTGGTTCCTAC
ACCCCTCACCAATGTGCCCAGTGCTCCCAGCACCCCCGGACCAGGACCGGAGCCACCTGCCTCCTTGTCC
TTCAACACTCCCGAGTACCTGAAGTCAACCTTTTCCAAAACAGACTCCATCACCACAGGAACTGTCTCCA
CTGTCAAGAACGGATTGCCCACAGATAAACCAGCTGTCACCGAAGATGTAAACATTTACCAGAAATATAT
TGCCAGGTTCTCAGGAAGTCAGCACTGCGGTCACATCCACTGCGCCTACCAGTACCGTGAGCACTATCAC
TGCCTGGACCCGGAGTGCAACTACCAGCGGTTCACAAGCAAGCAGGATGTGATCCGACATTACAACATGC
ACAAGAAGCGCGACAACTCCCTGCAGCACGGCTTCATGCGCTTCAGCCCGCTGGACGACTGCAGTGTCTA
CTACCACGGCTGCCACCTCAATGGGAAGAGCACCCACTACCACTGCATGCAGGTGGGATGTAACAAGGTA
TACACAAGTACGTCGGATGTGATGACTCACGAGAACTTCCACAAGAAGAACACCCAGCTCATCAACGATG
GCTTCCAGCGCTTCCGAGCCACGGAGGACTGCGGCACAGCTGACTGTCAGTTCTATGGACAGAAGACCAC
ACACTTCCACTGCAGGCGCCCTGGCTGCACATTCACCTTCAAGAACAAGTGTGACATCGAGAAGCACAAG
AGCTACCACATCAAGGATGATGCCTACGCCAAGGACGGCTTCAAGAAGTTCTACAAGTACGAGGAGTGCA
AATACGAGGGCTGCATGTACAGCAAGGCCACCAACCATTTCCACTGCATCCGCGCCGGCTGCGGCTTCAC
CTTCACCTCCACCAGCCAGATGACCTCACACAAGCGCAAGCACGAGCGGCGGCACATCCGGTCCTCGGGG
GCCCTGGGGCTGCCGGCCTCCCTGCTGGGCGCCAAGGACACGGAGCACGAGGAATCCAGCAACGATGACC
TCGTGGACTTCTCTGCCCTGAGCAGCAAGAACTCCAGCCTGAGCGCCTCCCCCACCAGCCAGCAATCGTC
CGCATCCCTGGCCGCTGCGGCTGCCGCCACCACTGCTGAGGCCATCCCCAGTGCCACCAAGCCTCCCAAT
AGCAAGATGGCAGGCCTGCTGCCCCAGGGCCTGTCTGGTTCCATCCCCTTAGCACTGGCCCTCTCTAACT
CAGGCCTGCCCACCACCACACCCTATTTCCCTCTGCTTCCTAACCGTGGGAGCGCCTCATTGCCTGTGGG
ATCTCCAGGGCTCCTGGGCTCCATGTCCTCTGGGGCCACAACCTCAGCAACCCCTGACATGCCGGCCCTG
ATGGCTTCCAGAGCTGGAGACTCGGCCCCCACGGCTGCCACCTCTCTCTCGGTGCCCCCTGCCTCCATCA
TTGAGAGAATCTCTGCAAGCAAAGGCCTCATCTCACCCATGATGGCTAGACTGGCTGCGGCCGCCCTCAA
GCCCTCTGCCACCTTTGACCCAGGAAGTGGGCAGCAGCCCACCCCCACCAAGTTCCCCCAGGCCCAGGTG
AAGCAGGAGCCTGACAGTGCTGGCACCCCAGGTCCCCACGAGGCCTCCCAAGACCGCAGTCTAGACCTGA
CCGTGAAGGATCCCAGTAATGAATCAAATGGCCACGCAGTCTCGGCAAATTCATCTCTTTTATCCTCGCT
TATGAATAAGATGTCTCAGGGCAACCCCAGCCTCGAAAGCTTCCTGAGCATCAAGACAGAAGCGGAGGGG
AGCCCCGCCGGGGAGCCCTCGCCTTTCTTGGGCAAGGCCGTGAAGGCACTAGTTCAAGAGAAGCTGTCAG
AGCCTTGGAAGGTGTATCTCCGCAGGTTTGGTACCAAGGACTTCTGTGATGCCCAGTGTGACTTCCTCCA
CAAGGCGCATTTCCATTGTGTAGTGGAGGAGTGCGGTGCGCTTTTCAGCACCTTGGACGGAGCCATCAAA
CATGCAAACTTCCACTTCCGGACAGAGGGAGGAACAGCAAAAGGAACCCCAGAGGCTTCCTTCCCGACCT
CTGCTGCTGAGACCAAACCTCCCTTGGCACCCTCGTCCCTGCCAGCACCTCCTGGCACCATGGTCGCTGG
ATCTTCTCTGGAGGGGCCTGCTCCCAGCCCGGTCTCTGTGCCCTCCACCCCCACCCTGCTCGCCTGGAAG
CAGCTGGCTTCCACCATACCCCAGATGCCTCAGATTCCCTCCTCAGTGCCTCACCTGCCCACCTCGCCCC
TGGCGACGACGTCTCTAGAGAGCGCCAAGCCTCAGGTCAAACCCGGGTTCCTCCAGTTCCAGGACAACGA
TCCATGCCTGGCGACGGACTGCAAATACGCCAGCAAGTTCCACTTCCACTGTCTCTTCGGGAACTGCAAG
TACGTCTGCAAGACCTCGGGCAAGGCTGAGTCCCACTGCTTGGACCACATCAACCCCAGCAACAGCCTGG
TGAACGTGCGAGACCAGTTTGCTTACTACTCTCTACAGTGCCTGTGTCCCAACCAGCACTGTGAGTTCCG
GATGCGTGGACACTACCACTGCCTCCGGACGGGCTGCTACTTTGTCACCAACATCACCACCAAACTTCCA
TGGCATATAAAGAAGCATGAGAAGGCTGAACGACGGGCAGCCAACGGGTTCAAATACTTCACCAAGCGCG
AGGAGTGCGGAAGACTAGGCTGCAAGTACAACCAGGTGAACAGCCACTTCCACTGCATCCGGGAAGGTTG
TCAGTTCTCCTTTCTCCTCAAGCACCAGATGACCTCGCATGCCCGGAAGCACATGCGGAGGATGCTGGGG
AAGAACTTTGACCGAGTGCCCCCATCCCAGGGTCCCCCGAGCCTAATGGATGCCGAGACAGACGAGGGCA
TGGACTATACAGGCTGTAGCCCTGGAGCGGCGTCCTCAGAGTCTTCCACCATGGACCGTAGCTGTTCCAG
CACCCCTGTGGGCAATGAGAGCACAGCTGCAGGGAACACCATCTCCATGCCGACAGCCTCGGGGGCCAAA
AAGCGCTTTTGGATCATCGAGGACATGTCTCCCTTTGGCAAGCGAAGGAAGACAGCCTCGTCTCGGAAGA
TGCTGGACGAGGGCATGATGCTGGAGGGTTTCCGGCGCTTTGACCTCTATGAGGACTGCAAGGATACAGC
CTGCCAGTTCTCACTCAAGGTCACCCACTACCACTGCACGCGGGAAAACTGCGGCTACAAGTTTTGCGGA
CGCACGCACATGTACAAGCACGCACAGCACCACGACCGCGTGGACAACCTGGTGCTGGACGACTTCAAGC
GCTTCAAGGCCTCCCTCAGCTGCCACTTCGCCGACTGCCCGTTCTCGGGCACCAGCACGCACTTCCACTG
CCTGCGCTGCCGCTTCCGTTGCACAGACAGCACCAAGGTCACTGCGCACCGCAAGCACCACGGCAAGCAG
GACGTGATCAGCGCCGCTGGCTTCTGCCAGTTCAGCTCGAGCGCCGACTGCGCAGTGCCCGACTGCAAGT
ACAAGCTCAAGTGCTCGCACTTCCACTGCACCTATCCGGGCTGTCGCCACACAGTGGTGGGCATGTCGCA
GATGGACTCGCACAAGCGCAAGCACGAGAAGCAGGAGCGAGGGGAGCCTCCCGCAGCCTCTCCGGGTGCG
CCTGTCAACCTGGACGGCTCCCTCACGCTGGCCGCCGAGCAGGGCTCGCTGCTCTTCCTGCAGACAGCGG
CTGCGGGCCTAGGCCTGCTCGGGGACACGGGGGACCCCGGCCCACCTGTCACCGCCTCCGGGACTCGGGA
CGGCCCCGCTGCGCCCACCCCCGCTGCCGCCGCCACCACCACCACCACCACCACAGCCACAGCCACAGCC
ACCGCTGGGGAGTCCTCCCAAGAGGACGACGAGGAGCTGGAGCTGCCGGAGGAGGAGGCCGAGGACGACG
ACGAGGATGACGATGAAGAGGACGACGACGACGAGGATGATGATGATGATGACGACGACGAGGACCTGCG
CACCGACTCGGAGGAGTCGTTGCCCGAGGCTGCGGGCGAGGCGGGCGCGCGGACCCCGCTGGCAGCCCTG
GGTGGCCCCGGCCCTGCGCCCACCGCCGCATCACCCTAG

Translation (1762 aa):
MDLGTAESTRCTDPPAGKPPMAAKRKGGLKLNAICAKLSRQVVVEKGAEAGSQAEGSPLHPRDKERSGPE
SGVSRAPRSEEDKRRAVIEKWVNGEYCEDPAPTPVLGRIARDQELPPEGVYMVQPQGCSDEEDHAEEPSK
DNSVLEEKESDGTASKDDSGPSTRQASGETSSLRDYAASTMTEFLGMFGYDDQNTRDELAKKISFEKPHA
GSTPEVAASSMLPSSEDTLSKRARFSKYEEYIRKLKAGEQLPWPAHGSKAEDRAGKEVVGPLPSLRLPSN
TAHLETKATILPLPSHSSVQMQNLVARASKYDFFIHKLKTGENLRPQNGSTYKKPSKYDLENVKYLHLFK
PGEGSPDMGGAIAFKTGKVGRPSKYDVRGIQKPGPTKIPPAPSLVPTPLTNVPSAPSTPGPGPEPPASLS
FNTPEYLKSTFSKTDSITTGTVSTVKNGLPTDKPAVTEDVNIYQKYIARFSGSQHCGHIHCAYQYREHYH
CLDPECNYQRFTSKQDVIRHYNMHKKRDNSLQHGFMRFSPLDDCSVYYHGCHLNGKSTHYHCMQVGCNKV
YTSTSDVMTHENFHKKNTQLINDGFQRFRATEDCGTADCQFYGQKTTHFHCRRPGCTFTFKNKCDIEKHK
SYHIKDDAYAKDGFKKFYKYEECKYEGCMYSKATNHFHCIRAGCGFTFTSTSQMTSHKRKHERRHIRSSG
ALGLPASLLGAKDTEHEESSNDDLVDFSALSSKNSSLSASPTSQQSSASLAAAAAATTAEAIPSATKPPN
SKMAGLLPQGLSGSIPLALALSNSGLPTTTPYFPLLPNRGSASLPVGSPGLLGSMSSGATTSATPDMPAL
MASRAGDSAPTAATSLSVPPASIIERISASKGLISPMMARLAAAALKPSATFDPGSGQQPTPTKFPQAQV
KQEPDSAGTPGPHEASQDRSLDLTVKDPSNESNGHAVSANSSLLSSLMNKMSQGNPSLESFLSIKTEAEG
SPAGEPSPFLGKAVKALVQEKLSEPWKVYLRRFGTKDFCDAQCDFLHKAHFHCVVEECGALFSTLDGAIK
HANFHFRTEGGTAKGTPEASFPTSAAETKPPLAPSSLPAPPGTMVAGSSLEGPAPSPVSVPSTPTLLAWK
QLASTIPQMPQIPSSVPHLPTSPLATTSLESAKPQVKPGFLQFQDNDPCLATDCKYASKFHFHCLFGNCK
YVCKTSGKAESHCLDHINPSNSLVNVRDQFAYYSLQCLCPNQHCEFRMRGHYHCLRTGCYFVTNITTKLP
WHIKKHEKAERRAANGFKYFTKREECGRLGCKYNQVNSHFHCIREGCQFSFLLKHQMTSHARKHMRRMLG
KNFDRVPPSQGPPSLMDAETDEGMDYTGCSPGAASSESSTMDRSCSSTPVGNESTAAGNTISMPTASGAK
KRFWIIEDMSPFGKRRKTASSRKMLDEGMMLEGFRRFDLYEDCKDTACQFSLKVTHYHCTRENCGYKFCG
RTHMYKHAQHHDRVDNLVLDDFKRFKASLSCHFADCPFSGTSTHFHCLRCRFRCTDSTKVTAHRKHHGKQ
DVISAAGFCQFSSSADCAVPDCKYKLKCSHFHCTYPGCRHTVVGMSQMDSHKRKHEKQERGEPPAASPGA
PVNLDGSLTLAAEQGSLLFLQTAAAGLGLLGDTGDPGPPVTASGTRDGPAAPTPAAAATTTTTTTATATA
TAGESSQEDDEELELPEEEAEDDDEDDDEEDDDDEDDDDDDDDEDLRTDSEESLPEAAGEAGARTPLAAL
GGPGPAPTAASP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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