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Report for CCDS51469.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51469.1 Public Mus musculus 5 Sh3bp2 23 108 98 CCDS HistoryNCBI Gene:24055Re-query CCDS DB by CCDS ID:51469.1Re-query CCDS DB by GeneID:24055See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51469.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101316.9 ENSMUSP00000098874.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101316.9Link to Ensembl Protein Viewer:ENSMUSP00000098874.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000101316Re-query CCDS DB by Protein ID:ENSMUSP00000098874
Original member Current member NCBI NM_001145858.1 NP_001139330.1 Accepted alive Link to Nucleotide Sequence:NM_001145858.1Link to Protein Sequence:NP_001139330.1Re-query CCDS DB by Nucleotide ID:NM_001145858Re-query CCDS DB by Protein ID:NP_001139330Link to BLAST:NP_001139330.1

Chromosomal Locations for CCDS 51469.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 34543455 34543582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34551561 34551700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34552737 34552839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34555457 34555574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34555942 34556012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34556891 34556979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34557295 34557363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34559001 34559649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34560344 34560452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34560689 34560744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34561026 34561107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34561603 34561662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34562359 34562496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1812 nt):
ATGTCTGGGGGATGCAGGTTGCAGTCCCTCCTCATAGCCCCTGAGCTGAATAGCCTTTCCGGATTTAAGG
ACACCTGTCCCCAGCAGGTCACAGGAAGTTGTACCATGTGTTGGGTCAGTGCCATGAGCTTCATGGCGGC
TGAGGAGATGCAGTGGCCTGTCCCCATGAAGGCCATTGGTGCCCAGAATTTGCTGACCATGCCTGGTGGT
GTGGCGAAGGCTGGTTACCTGCATAAGAAGGGTGGCACCCAACTGCAGCTGCTCAAATGGCCCCTCCGCT
TTGTGATCATCCACAAGCGCTGCATCTACTACTTCAAGAGCAGCACATCTGCCTCCCCACAGGGTGCCTT
CTCACTGAGTGGCTACAACAGAGTGATGCGAGCAGCTGAGGAGACCACGTCCAACAATGTCTTCCCATTC
AAGATCATTCACATCAGCAAGAAGCACCGAACATGGTTCTTCTCAGCGTCCTCTGAGGATGAGCGCAAGA
GCTGGATGGCCTTGCTACGCAGGGAAATTGGCCACTTCCATGAGAAGAAGGAACTACCTCTAGACACCAG
CGACTCTAGCTCAGACACGGACAGCTTCTATGGTGCAGTTGAGCGACCTATAGATATCAGCCTGTCTTCA
TATCCCATGGACAATGAAGATTACGAACATGAAGATGAGGACGACTCGTACCTGGAGCCTGATTCCCCGG
GGCCCATGAAGCTTGAAGATGCCCTGACCTATCCACCAGCCTACCCACCACCCCCTGTGCCTGTACCTCG
GAAGCCAGCCTTCTCTGACTTGCCCCGTGCCCACTCGTTCACCTCTAAAAGTCCAAGTCCCTTACTGCCA
CCCCCACCTCCTAAGCGAGGCCTTCCAGACACTGGCTCTGCCCCTGAGGATGCTAAGGACGCATTGGGCC
TGAGGCGAGTAGAGCCTGGCCTCAGGGTGCCTGCCACCCCTCGGAGGATGAGTGACCCCCCAATGAGCAA
TGTACCCACCGTGCCCAACCTCCGGAAACATCCTTGCTTCCGGGACAGTGTGAATCCCGGCCTAGAACCC
TGGACCCCTGGCCATGGGACTAGCTCTGTCTCCAGCTCTACCACCATGGCCGTTGCCACCTCTAGGAACT
GTGACAAACTCAAGTCATTCCACCTGTCTTCCCGAGGGCCACCCACATCTGAGCCCCCACCCGTGCCTGC
TAATAAGCCCAAGTTCCTGAAGATAGCTGAAGAACCTTCCCCGAGGGAGGCAGCCAAGTTTGCACCTGTG
CCCCCTGTGGCCCCCAGGCCTCCTGTGCAGAAGATGCCCATGCCTGAGGCTACTGTTCGGCCTGCAGTGC
TGCCTAGACCAGAGAACACACCTCTTCCTCACCTCCAGCGATCCCCCCCTGATGGACAGAGTTTCAGGGG
CTTCTCCTTTGAAAAGGCCCGCCAGCCCTCACAGGCTGACACTGGCGAGGAGGACTCAGATGAAGACTAT
GAGAAGGTGCCGCTGCCTAACTCGGTGTTTGTCAACACGACAGAGTCCTGCGAGGTGGAAAGGTTGTTCA
AAGCTACGGACCCCCGTGGAGAGCCTCAGGATGGGCTGTATTGCATTCGGAACTCCTCTACCAAGTCAGG
GAAGGTTTTGGTCGTGTGGGATGAATCTTCTAACAAAGTGAGGAATTATCGCATCTTTGAAAAGGATTCT
AAGTTCTACCTGGAAGGTGAGGTTCTGTTTGCCAGTGTGGGCAGCATGGTGGAGCACTACCACACCCATG
TGCTGCCCAGCCATCAGAGCCTGTTGCTGCGGCACCCATACGGCTACGCTGGGCCCAGGTGA

Translation (603 aa):
MSGGCRLQSLLIAPELNSLSGFKDTCPQQVTGSCTMCWVSAMSFMAAEEMQWPVPMKAIGAQNLLTMPGG
VAKAGYLHKKGGTQLQLLKWPLRFVIIHKRCIYYFKSSTSASPQGAFSLSGYNRVMRAAEETTSNNVFPF
KIIHISKKHRTWFFSASSEDERKSWMALLRREIGHFHEKKELPLDTSDSSSDTDSFYGAVERPIDISLSS
YPMDNEDYEHEDEDDSYLEPDSPGPMKLEDALTYPPAYPPPPVPVPRKPAFSDLPRAHSFTSKSPSPLLP
PPPPKRGLPDTGSAPEDAKDALGLRRVEPGLRVPATPRRMSDPPMSNVPTVPNLRKHPCFRDSVNPGLEP
WTPGHGTSSVSSSTTMAVATSRNCDKLKSFHLSSRGPPTSEPPPVPANKPKFLKIAEEPSPREAAKFAPV
PPVAPRPPVQKMPMPEATVRPAVLPRPENTPLPHLQRSPPDGQSFRGFSFEKARQPSQADTGEEDSDEDY
EKVPLPNSVFVNTTESCEVERLFKATDPRGEPQDGLYCIRNSSTKSGKVLVVWDESSNKVRNYRIFEKDS
KFYLEGEVLFASVGSMVEHYHTHVLPSHQSLLLRHPYGYAGPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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