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Report for CCDS51662.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51662.1 Public Mus musculus 5 Pom121 23 108 98 CCDS HistoryNCBI Gene:107939Re-query CCDS DB by CCDS ID:51662.1Re-query CCDS DB by GeneID:107939See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51662.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111171.5 ENSMUSP00000106801.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111171.5Link to Ensembl Protein Viewer:ENSMUSP00000106801.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111171Re-query CCDS DB by Protein ID:ENSMUSP00000106801
Original member Current member NCBI NM_148932.2 NP_683734.2 Accepted alive Link to Nucleotide Sequence:NM_148932.2Link to Protein Sequence:NP_683734.2Re-query CCDS DB by Nucleotide ID:NM_148932Re-query CCDS DB by Protein ID:NP_683734Link to BLAST:NP_683734.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_683734.2 1200 Q8K3Z9 1200 100% 0 0

Chromosomal Locations for CCDS 51662.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 135378077 135378174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135378635 135378757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135380920 135382536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135383071 135383244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135383627 135383729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135383839 135383963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135384093 135384166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135384853 135384944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135386824 135386995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135388637 135388717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135391622 135391780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135392310 135392525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135393937 135394505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3603 nt):
ATGTCTCCGGCGGCTGCGGCGGCTGACGGAGGCGAGCGGCGGCGGCCCCCGTTGGGCGGACGGGAAGGCC
GGAGCCGGGCCCGCGGCTACGGAGGACCGGCGGGTGCTGCGGCCCTCGGCCTAGCGCTGCTCGGCCTCGC
GCTCTACCTGGTGCCCGCGGCGGCCGCGCTGGCCTGGCTGGCCGTGGGGGCGAGCGCGGCCTGGTGGGGC
CTGAGCCGAGAACCCCGCGGCCCGAGGGCCCTGTCGTCCTTCGTGCGCGACGCGCGCCGTCACCCGCGGC
CAGCTCTCACCGCTTCACCGCCTCCGGCCAAGTCACCAGTCAACGGTAGCCTCTGCGAACCCCGCAGCCC
GCTGGGAGGCCCCGACCCGGCTGAGCTCTTACTCATGGGCAGCTACCTGGGCAAGCCCGGCCCGCCCGAG
CCTGCCCTCCGGCAGGACCCAAGGGAGAGGCCGGGGCGCCGCCCACCCGCACGCTCCCCGCCTCCGGCCT
CGGCGGTCCAGCGAGTCCACCACGTCTACCCCGCGCTCCCCACCCCGCTTTTGCGACCCTCCCGGAGGCC
GCCCCACCGAGATTGTGGGCCTTTGTCCAGTCGGTTTGTTATAACACCCCGAAGACGATATCCCATTCAG
CAAGCCCAGTATTCCTTGCTTGGGGCACTTCCAACCGTCTGCTGGAATGGTGGCCATAAGAAGGCTGTGC
TGTCTCCACGGAACTCCAGGATGGTGTGCAGCCCAGTGACAGTGAGGATTGCCCCTCCAGACAGCAAGCT
ATTCCGCTCATCAATGTCAGAGCAGATACTCGATACAACACTGTCTTCACCATCAAGTAATGCCCCAGAT
CCTTGTGCAAAGGAGACTGTCCTGAACGCCCTCAAGGAGAAGAAGAAAAGAACAGTGGCGGAGGAAGACC
AGCTGCACCTTGATGGCCAGGAAAACAAGAGAAGGCGCCATGATAGCGGTGGGAGCGGACATTCAGCATT
CGAGCCCCTTGTGGCCAACGGAGTCCCTGCTGCATTTGTGCCTAAGCCTGGCTCCCTGAAGAGAAGTCTG
GCTTCCCAGAGCTCAGATGACCACTTGAACAAACGGTCTCGCACCTCCTCTGTGAGCTCCCTGGCTAGTG
CGTGCACAGGAGGCATCCCCAGTTCTAGCCGCAATGCCATCACCAGCTCCTACAGCTCCACCCGTGGCAT
CTCACAGCTGTGGAAGAGGAGTGGTCCCACATCTTCTCCCTTCTCCAGTCCAGCTTCCTCCCGCTCCCAG
ACACCAGAGAGGCCAGCCAAGAAGACAAGAGAGGAGGAGCCATGTCAGCAGTCCAGTTCTTCACCTCCCT
TGGTGACAGACAAGGAGTCCCCAGGAGAAAAGGTTACAGATACAACCACTGGGAAGCAGCAGAGCTCATG
GACTTCCCCACCCACACCTGGCAGCTCCGGGCAACGCAAACGCAAGATCCAGCTGCTGCCCTCCCGGCGA
GGGGACCAGCTCACCTTGCCTCCACCCCCAGAGCTTGGCTATTCCATCACTGCTGAAGACCTGGACATGG
AGAGGAAAGCCTCACTGCAATGGTTTAACAAGGTCTTGGAGGACAAGCCAGATGATGCTTCCGCCTCAGC
CACTGATGGCCCCCCTTCCACCAGCCCTCCCTTCACATTCACCCTGCCCGCTGTGGGGCCTGCTGCCTCG
CCAGCCTCCCTCCCGGCTCCCAGCTCTAACCCACTGTTGGAGAGCTTGAAGAAGATGCAGGAGTCTCCAG
CCCCATCATCCTCGGAACCTGCTGAGGCAGCAACAGTTGCAGCCCCTTCACCTCCGAAGACACCCAGCCT
CTTGGCCCCTCTTGTCTCACCACTGGCAGGGCCCCTAGCCAGCACCTCCTCAGACTCCAAACCTGCAGCC
ACCTTCCTGGGGCTGGCTTCTGCTTCGTCTATAACCCCACTCACTGACAGCAAGTCCTCTGGAGTCTCTC
AGGCTGAGCAGTCTGTCAGCACCCCAGCCTCCACAGCCTCCTCCCCGACCCCAAAGCCCAGCATGCTGTT
TGGGATGCTGAGTCCACCTGCCAGCTCTTCCTCCCTTGCCACTCCAGCTCCGGCTTGTGCTTCTCCCATG
TTTAAGCCCATTTTTCCAGCCACACCTAAAAGTGAGAGTGATAGCCCCTTACCAAGTAGCTCCTCAGCCG
CCACTACAGCTTCATCCAGCACCGCCCCTCCCACAGCAGCCAGCACCACACCCACGTTCAAGCCCATTTT
TGACAAGATGGAGCCATTCACAGCCATGCCCCTGTCAACTCCCTTCTCCCTGAAGCAGACAACTGCTACA
GCCACCACTACAGCCACATCAGCTCCTCTCTTTACTGGCCTGGGCACTGCCACTTCCACGGTGGCCTCTG
GCACCGCAGCTTCTGCCTCAAAGCCTGTCTTTGGCTTTGGAGTGACCACTGCAGCGAGTACTGCCAGCAG
TACCATGACTTCCACTTCCCAGTCAGTTCTGTTCGGGGGAGCCCCCCCTGTTACTACTTCTAGCTCTGCC
CCAGCTCTGGCCTCCATCTTCCAGTTTGGCAAGCCTCTTGCCCCAGCAGCATCTGCAGCAGGCACCTCCT
TTAGCCAGCCCCTTGCCAGCTCTACCCAGACTGCTGCCAGCAATAGTGGCTTCAGTGGTTTTGGCAGCAC
CCTCACCACCTCCACCTCGGCCCCTGCCACCACCAGTCAGCCCACGCTGACCTTCAGCAACACTGTCACC
CCCACCTTCAACATTCCCTTTAGCTCCAGTGCCAAGCCTGCGCTCCCAACCTACCCTGGAGCCAACTCAC
AGCCCACATTTGGAGCCACCGATGGGGCCACCAAGCCAGCACTTGCCCCAAGTTTTGGCAGCTCGTTCAC
TTTCGGCAACTCTGTGGCCTCAGCCCCATCGGCAGCCCCAGCACCAGCCACCTTTGGCAGTGCTGCACAG
CCAGCTTTCGGAGGGTTGAAAGCCGCAGCCTCCACCTTCGGCGCCCCTGCCAGCACTCAGCCAGCTTTTG
GTAGCACCACGTCTGTGTTCTCCTTTGGGTCAGCTACCACATCTGGCTTTGGTGCTGCTGCCACCGCTGC
TACCACCACACAGACCACCAACAGTGGGAGCAGCAGCTCTCTGTTTGGCAGCTCTGCTCCATCCCCATTC
ACATTCGGTGGCTCAGCAGCTCCTGCTGGCAGTGGAGGCTTTGGCCTTAGTGCTACCCCAGGCACCAGCT
CCACCTCTGGAACTTTCAGCTTTGGATCTGGACAGAGTGGGACCCCGGGCACCACCACCTCCTTTGGAAG
TCTGAGTCAGAACACCCTGGGCGCACCCAGCCAGGGCTCACCCTTTGCCTTCAGTGTGGGCAGTACACCT
GAAAGCAAGCCTGTGTTTGGAGGCACATCTACACCTACTTTCGGGCAGAGTGCCCCTGCCCCCGGCGTAG
GCACCACAGGGAGCAGCCTCTCATTTGGGGCCTCTTCAACACCTGCCCAAGGCTTTGTTGGAGTTGGACC
TTTTGGATCAGCAGCTCCTTCGTTTTCCATTGGTGCGGGATCCAAGACCCCAGGGGCTCGACAGCGACTT
CAGGCCCGAAGGCAGCACACCCGCAAGAAGTAG

Translation (1200 aa):
MSPAAAAADGGERRRPPLGGREGRSRARGYGGPAGAAALGLALLGLALYLVPAAAALAWLAVGASAAWWG
LSREPRGPRALSSFVRDARRHPRPALTASPPPAKSPVNGSLCEPRSPLGGPDPAELLLMGSYLGKPGPPE
PALRQDPRERPGRRPPARSPPPASAVQRVHHVYPALPTPLLRPSRRPPHRDCGPLSSRFVITPRRRYPIQ
QAQYSLLGALPTVCWNGGHKKAVLSPRNSRMVCSPVTVRIAPPDSKLFRSSMSEQILDTTLSSPSSNAPD
PCAKETVLNALKEKKKRTVAEEDQLHLDGQENKRRRHDSGGSGHSAFEPLVANGVPAAFVPKPGSLKRSL
ASQSSDDHLNKRSRTSSVSSLASACTGGIPSSSRNAITSSYSSTRGISQLWKRSGPTSSPFSSPASSRSQ
TPERPAKKTREEEPCQQSSSSPPLVTDKESPGEKVTDTTTGKQQSSWTSPPTPGSSGQRKRKIQLLPSRR
GDQLTLPPPPELGYSITAEDLDMERKASLQWFNKVLEDKPDDASASATDGPPSTSPPFTFTLPAVGPAAS
PASLPAPSSNPLLESLKKMQESPAPSSSEPAEAATVAAPSPPKTPSLLAPLVSPLAGPLASTSSDSKPAA
TFLGLASASSITPLTDSKSSGVSQAEQSVSTPASTASSPTPKPSMLFGMLSPPASSSSLATPAPACASPM
FKPIFPATPKSESDSPLPSSSSAATTASSSTAPPTAASTTPTFKPIFDKMEPFTAMPLSTPFSLKQTTAT
ATTTATSAPLFTGLGTATSTVASGTAASASKPVFGFGVTTAASTASSTMTSTSQSVLFGGAPPVTTSSSA
PALASIFQFGKPLAPAASAAGTSFSQPLASSTQTAASNSGFSGFGSTLTTSTSAPATTSQPTLTFSNTVT
PTFNIPFSSSAKPALPTYPGANSQPTFGATDGATKPALAPSFGSSFTFGNSVASAPSAAPAPATFGSAAQ
PAFGGLKAAASTFGAPASTQPAFGSTTSVFSFGSATTSGFGAAATAATTTQTTNSGSSSSLFGSSAPSPF
TFGGSAAPAGSGGFGLSATPGTSSTSGTFSFGSGQSGTPGTTTSFGSLSQNTLGAPSQGSPFAFSVGSTP
ESKPVFGGTSTPTFGQSAPAPGVGTTGSSLSFGASSTPAQGFVGVGPFGSAAPSFSIGAGSKTPGARQRL
QARRQHTRKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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