CCDS Report for Consensus CDS

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Report for CCDS51671.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
51671.1	Public	Mus musculus	5	Ephb4	23	108	98

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51671.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000111055.8	ENSMUSP00000106684.2	Accepted	alive
		NCBI	NM_001159571.1	NP_001153043.1	Accepted	alive

Chromosomal Locations for CCDS 51671.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)

Genome Browser links:

Chromosome	Start	Stop
5	137350598	137350649
5	137354089	137354159
5	137354280	137354567
5	137357542	137357938
5	137360365	137360520
5	137361134	137361466
5	137362363	137362514
5	137363159	137363324
5	137364948	137365050
5	137365453	137365517
5	137365624	137365737
5	137366541	137366788
5	137369713	137369928
5	137370711	137370860
5	137372024	137372217
5	137372385	137372540
5	137373512	137373641

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2991 nt):
ATGGAGCTCCGAGCGCTGCTGTGCTGGGCTTCCCTCGCCACTGCTTTAGAAGAGACCCTGTTGAACACAA AACTGGAAACGGCGGATCTGAAATGGGTGACTTACCCTCAGGCAGAGGGCCAGTGGGAGGAGCTAAGCGG CCTGGATGAGGAACAGCACAGCGTCCGCACCTATGAGGTGTGCGACATGAAGCGTCCAGGGGGCCAGGCT CACTGGCTGCGCACTGGCTGGGTCCCAAGGCGAGGTGCTGTCCACGTGTATGCCACGATACGCTTCACCA TGATGGAATGCCTGTCCCTGCCGAGGGCCAGTCGCTCCTGCAAGGAGACATTCACTGTCTTCTATTACGA GAGCGAAGCTGATACGGCCACGGCCCATACGCCCGCCTGGATGGAGAACCCCTACATCAAGGTGGACACA GTGGCCGCAGAACATCTGACTCGGAAGCGCCCTGGAGCTGAAGCCACAGGGAAAGTTAATATCAAGACGC TGCGCCTGGGTCCTCTCAGCAAAGCTGGCTTCTACCTGGCTTTCCAGGACCAAGGAGCCTGCATGGCTCT GCTCTCCCTGCATCTCTTTTACAAGAAGTGCTCCTGGCTGATCACGAACTTGACCTACTTCCCCGAGACG GTGCCTCGGGAGCTCGTGGTGCCGGTGGCAGGTAGCTGCGTGGCCAACGCGGTCCCTACCGCCAACCCCA GCCCCAGCCTCTACTGCCGGGAAGATGGTCAATGGGCTGAGCAGCAGGTCACGGGCTGCAGCTGCGCGCC AGGGTACGAGGCTGCGGAAAGCAACAAAGTATGCAGAGCCTGTGGCCAGGGAACCTTCAAGCCCCAAATA GGAGACGAGTCCTGCCTGCCATGCCCAGCCAACAGCCACTCGAATAACATTGGGTCTCCTGTCTGCCTGT GTCGAATTGGGTATTACCGGGCCCGCTCAGACCCCCGGAGTTCACCTTGCACTACCCCACCCTCTGCTCC AAGAAGCGTGGTTCACCATTTGAATGGTTCCACCCTGCGCCTGGAATGGAGTGCTCCCCTTGAGTCCGGA GGCCGAGAGGACCTCACTTATGCTGTACGCTGCCGAGAGTGCCGTCCTGGGGGTTCCTGCTTGCCCTGTG GGGGCGACATGACCTTCGACCCCGGTCCTCGAGACCTGGTTGAGCCCTGGGTGGCAATCCGAGGGCTGCG TCCTGATGTCACCTATACCTTTGAGGTTGCTGCTTTGAATGGTGTGTCTACCTTAGCCACTGGACCACCT CCTTTTGAGCCTGTCAATGTCACCACTGACCGTGAGGGGCGCATTGGGTTTCTTTCTCCTGCAGTGCCTC CTGCAGTGTCTGACATCCGAGTGACTCGGTCGTCACCCAGCAGCTTGATCCTGTCATGGGCTATCCCCAG AGCACCCAGTGGGGCCGTGCTGGACTACGAGGTCAAGTATCATGAGAAGGGCGCAGAGGGCCCCAGCAGT GTTCGTTTCCTGAAGACATCAGAAAACCGAGCTGAGCTCCGGGGGCTGAAGCGGGGAGCCAGCTATCTGG TCCAGGTACGCGCACGGTCCGAGGCTGGCTACGGTCCCTTCGGCCAGGAGCATCACAGTCAGACTCAACT GGATGAGAGCGAGAGCTGGCGGGAGCAGCTGGCCCTGATTGCAGGCACTGCGGTTGTGGGTGTGGTCCTG GTCCTGGTGGTCGTCATCATTGCAGTTCTCTGCCTCAGGAAGCAGAGCAATGGGAGGGAAGTTGAGTACT CGGATAAGCATGGGCAGTATCTCATCGGGCACGGTACCAAGGTCTACATTGATCCTTTTACTTACGAAGA CCCTAATGAGGCAGTGAGGGAATTTGCCAAAGAGATCGATGTCTCCTATGTCAAGATTGAAGAGGTAATT GGTGCAGGTGAGTTCGGCGAGGTGTGCCGGGGTCGGCTGAAGGCACCAGGGAAAAAGGAGAGCTGTGTGG CCATCAAGACTCTGAAGGGTGGCTACACCGAGCGCCAGAGGCGTGAGTTCCTGAGCGAGGCCTCCATCAT GGGCCAGTTCGAGCATCCCAACATCATCCGCCTCGAGGGCGTGGTCACCAACAGTGTGCCGGTTATGATC CTCACGGAATTCATGGAGAACGGAGCCCTGGACTCCTTCCTGCGGCTGAACGACGGGCAGTTCACAGTCA TCCAGCTGGTGGGCATGCTGAGGGGCATCGCCTCGGGCATGCGGTACCTGGCTGAAATGAGCTATGTCCA CCGAGACCTGGCTGCTCGGAACATCTTGGTCAACAGTAACCTGGTCTGCAAGGTGTCCGACTTTGGCCTC TCCAGATTCTTGGAGGAGAACTCCTCTGATCCCACCTACACAAGTTCCCTGGGAGGCAAGATTCCCATCC GATGGACCGCCCCTGAAGCCATTGCCTTCAGGAAGTTCACCTCTGCCAGTGATGCCTGGAGCTATGGGAT CGTCATGTGGGAGGTCATGTCTTTTGGGGAACGGCCATACTGGGACATGAGCAACCAGGATGTGATCAAT GCCATTGAACAGGACTACCGGCTGCCTCCTCCTCCAGACTGCCCCACCTCCCTCCACCAGCTCATGCTGG ATTGTTGGCAGAAGGACCGGAATGCCCGGCCCCGCTTTCCCCAGGTGGTCAGCGCTCTGGACAAGATGAT CCGGAATCCCGCTAGCCTCAAAATCGTGGCCAGGGAGAATGGCGGGGCCTCACATCCACTCTTGGACCAA CGGCAGCCTCACTATTCTGCTTTCGGTTCTGTGGGCGAGTGGCTTCGAGCCATCAAGATGGGAAGATACG AGGAAAGTTTTGCAGCGGCTGGATTCGGCTCCTTTGAGGTGGTCAGTCAGATCTCTGCCGAGGACCTTCT CCGAATTGGAGTCACTCTGGCAGGACACCAGAAGAAAATCTTGGCCAGTGTGCAGCATATGAAGTCCCAA GCTAAGCCAGGAGCCCCTGGTGGGACAGGGGGACCAGCCCAGCAGTTCTGA
Translation (996 aa):
MELRALLCWASLATALEETLLNTKLETADLKWVTYPQAEGQWEELSGLDEEQHSVRTYEVCDMKRPGGQA HWLRTGWVPRRGAVHVYATIRFTMMECLSLPRASRSCKETFTVFYYESEADTATAHTPAWMENPYIKVDT VAAEHLTRKRPGAEATGKVNIKTLRLGPLSKAGFYLAFQDQGACMALLSLHLFYKKCSWLITNLTYFPET VPRELVVPVAGSCVANAVPTANPSPSLYCREDGQWAEQQVTGCSCAPGYEAAESNKVCRACGQGTFKPQI GDESCLPCPANSHSNNIGSPVCLCRIGYYRARSDPRSSPCTTPPSAPRSVVHHLNGSTLRLEWSAPLESG GREDLTYAVRCRECRPGGSCLPCGGDMTFDPGPRDLVEPWVAIRGLRPDVTYTFEVAALNGVSTLATGPP PFEPVNVTTDREGRIGFLSPAVPPAVSDIRVTRSSPSSLILSWAIPRAPSGAVLDYEVKYHEKGAEGPSS VRFLKTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDESESWREQLALIAGTAVVGVVL VLVVVIIAVLCLRKQSNGREVEYSDKHGQYLIGHGTKVYIDPFTYEDPNEAVREFAKEIDVSYVKIEEVI GAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIRLEGVVTNSVPVMI LTEFMENGALDSFLRLNDGQFTVIQLVGMLRGIASGMRYLAEMSYVHRDLAARNILVNSNLVCKVSDFGL SRFLEENSSDPTYTSSLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMSFGERPYWDMSNQDVIN AIEQDYRLPPPPDCPTSLHQLMLDCWQKDRNARPRFPQVVSALDKMIRNPASLKIVARENGGASHPLLDQ RQPHYSAFGSVGEWLRAIKMGRYEESFAAAGFGSFEVVSQISAEDLLRIGVTLAGHQKKILASVQHMKSQ AKPGAPGGTGGPAQQF

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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