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Report for CCDS51721.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51721.1 Public Mus musculus 6 Thsd7a 23 108 98 CCDS HistoryNCBI Gene:330267Re-query CCDS DB by CCDS ID:51721.1Re-query CCDS DB by GeneID:330267See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51721.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119581.6 ENSMUSP00000113681.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119581.6Link to Ensembl Protein Viewer:ENSMUSP00000113681.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000119581Re-query CCDS DB by Protein ID:ENSMUSP00000113681
Original member Current member NCBI NM_001164805.1 NP_001158277.1 Accepted alive Link to Nucleotide Sequence:NM_001164805.1Link to Protein Sequence:NP_001158277.1Re-query CCDS DB by Nucleotide ID:NM_001164805Re-query CCDS DB by Protein ID:NP_001158277Link to BLAST:NP_001158277.1

Chromosomal Locations for CCDS 51721.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 12317367 12317451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12318114 12318201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12320907 12321117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12321889 12321971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12324597 12324692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12327494 12327667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12330938 12331112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12331545 12331690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12331929 12332046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12337252 12337367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12338581 12338725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12343113 12343266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12348197 12348330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12349710 12349715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12351985 12352163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12379393 12379656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12381221 12381415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12396556 12396659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12397839 12397971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12405109 12405224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12408803 12409037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12418245 12418439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12468789 12469001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12471042 12471197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12500987 12501168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12503916 12504164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12554895 12555726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 12748797 12748953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4941 nt):
ATGGGGTTGCGAGCCGGGCGCCTGGCGTCCCCGAGCCGGGGCGTCCTGCAGCTGCTGCGGTTGCCACTGC
TCTTGCTACTCCTGCTGAGCTCTGGCGCCCGCGGGGCTGCGGCGCAGGGAGACACCGAGGTGCCCACCCT
CTATCTGTGGAAGACCGGTCCCTGGGGACGATGCATGGGAGATGACTGTGGACCGGGCGGCATCCAGACT
CGGGCTGTGTGGTGTGCTCACGTGGAAGGCTGGACTACGTTACATACAAACTGCAAGCAGGCTGTGAGAC
CCAGTAACCAGCAAAACTGTTTCAAGGTCTGTGACTGGCACAAGGAATTGTACGACTGGAGGCTGGGAAC
CTGGGATCGGTGTCAGCCTGTGATTTCGAAAAGCCTCGAGAAATCGCGAGAATGCGTGAAGGGTGAGGAA
GGCATCCAGGTGAGAGAGATAATGTGCATCCAAAAGGACAAGGACATTCCCGCCGAGGACATCATCTGCG
AGTACTTTGAACCCAAGCCCCTTCTGGAACAGGCCTGCCTCATCCCTTGCCAGAAAGACTGCATCGTGTC
TGAGTTCTCACCCTGGTCTGAGTGTTCCAGGACCTGTGGCAGTGGCCTGCAGCACCGCACGAGGCACGTG
GTTGCACCGCCACAGTATGGAGGCTCTGGCTGTCCCAACCTCACCGAGTTTCAGGTGTGCCAGTCCAACC
CCTGCGAGGAGGATGAGAGCTTGTACAGCTTGCAGGTGGGGCCCTGGAGCGCATGCTCAGTCCCACACAC
AAGGCAAGCCAGGCAAGCCAGGCGTCGTGGCAAGAACAAGGAGAGGGAGAAGGAGAGAGGAAAAGCCGTG
AAGGACCCAGAGGCCCGTGAGCTCATCAAGAAGAAGAGAAACAGAAACAGACAGAACAGACAGGAGAACA
GATACTGGGACATCCAGATTGGCTATCAGACCCGGGACGTGACGTGCTTAAACAGGACTGGGAAATCTGC
GGACCTCAGCTTTTGCCAGCAAGAGAGGCTGCCCATGACCTTCCAGTCCTGCGTGATCACCAAAGAGTGC
CAGGTGTCTGAGTGGTTGGAATGGAGCCCATGTTCAAAAACATGCCACGATGTCACATCCCCTACAGGCA
CTCGAGTAAGGACAAGGACTATCACACAGTTTCCGATTGGAAGTGAGAAGGAATGTCCAGCTCTTGAGGA
GAAGGAGCCCTGTGTGTCTCAGGGAGATGGAGCTGTCCTCTGTGCTACATATGGCTGGAGAACTACAGAG
TGGACAGAGTGCCACGTGGACCCTTTGCTTAGTCAGCAGGACAAGAGGCGTGCCAATCAGACAGCCCTCT
GTGGAGGAGGTGTCCAGACCCGGGAAATATATTGCATACAAACCAACGACAACATGCTCTCCCATGGAAA
TACACAGAAGGACAAAGAAGCTTCAAAACCAGTGGACTCAAAATTATGCACTGGCCCTGTTCCTAACACC
ACACAGCTGTGCCACGTTCCTTGTCCAATTGAATGTGAGGTTTCGCCTTGGTCAGCCTGGGGACCATGTA
CTTATGAAAACTGTAATGACCAGCAAGGCAAAAAAGGATTCAAATTAAGGAAGCGACGCATTACTAATGA
GCCTACTGGAGGTTCTGGGGCAACTGGAAACTGCCCTCACTTATTGGAAGCCATTCCCTGTGAAGAGCCA
TCCTGCTATGACTGGAAATCAGTGAGACTCGGAGACTGTGAACCAGATAATGGAAAATCCTGTGGGCCTG
GCACTCAAGTTCAAGAGGTTGTATGCATCAACAGTGATGGAGAAGAAGTGGACAGACAGCTCTGCAGAGA
CGCAATCTTTCCTATCCCTGTGGCCTGTGATGCTCCATGCCCGAAGGACTGTGTGCTCAGTGCGTGGTCC
TCGTGGTCCTCCTGTTCGCATACCTGCTCTGGGAAAACCACAGAAGGGAAACAGACCCGAGCCCGGTCAA
TTTTGGCCTATGCAGGTGAAGAAGGTGGAATTCGCTGCCCTAACATCAGTGCTTTGCAAGAGGTGCGCAG
CTGCAATGAGCATCCTTGCACTGTGTACCACTGGCAAACTGGTCCCTGGGGTCAGTGTATAGAGGACACA
TCGGTGTCATCCTTCAATACGACCACAACATGGAATGGGGAGGCCTCATGTTCTGTGGGCATGCAGACAC
GAAAAGTCATCTGTGTGCGAGTCAACGTGGGCCAAGTGGGACCTAAGAAGTGTCCTGAAAGCCTTCGGCC
TGAAACAGTGAGACCCTGCTTGCTTCCTTGTCGGAAGGACTGTGTCGTGACCCCATACAGTGACTGGACT
CCATGCCCCTCTTCATGCAGAGAAGGAGACTCTGGAGCCAGGAAGCAGTCTCGACAGCGAGTCATCATTC
AGCTGCCAGCCAATGGCGGCAAGGAATGCTCAGACCCACTATATGAAGAGAAGGCCTGTGAAGCCCCTCC
CACATGTCACAGCTACAGGTGGAAGACACACAAATGGCGCAGGTGCCAGTTAGTTCCTTGGAGCATTCAA
CAGGATGTTCCTGGAGCACAGGAAGGCTGCGGACCTGGGCGGCAGGCAAGAGCCATTACTTGTCGAAAGC
AAGATGGAGGGCAGGCTAGCATCCAGGAGTGCCTCCAGTATGCAGGCCCTGTGCCAGCCCTGACCCAGGC
TTGCCAGATCCCCTGCCAAGATGACTGTCAATTTACCAGCTGGTCCAAGTTTTCTTCATGCAACGGAGAC
TGCGGTGCAGTTAGGACCAGAAAGCGTGCTATTGTTGGGAAAAGTAAAAAGAAGGAAAAATGTAAAAACT
CTCATTTGTACCCTCTGATCGAGACCCAGTATTGTCCCTGTGACAAATATAACGCACAGCCTGTGGGGAA
CTGGTCAGACTGTATTTTACCGGAAGGGAAGGCGGAGGTGCTGCTGGGAATGAAGGTACAAGGCGACAGC
AAGGAATGCGGGCAAGGATACCGTTACCAAGCGATGGCGTGCTATGATCAAAATGGCAGACTTGTGGAAA
CATCGCGATGCAACAGCCATGGTTACATAGAAGAAGCCTGCATCATCCCCTGCCCCTCAGACTGCAAGCT
CAGTGAGTGGTCCAACTGGTCCCGCTGCAGCAAGTCCTGTGGCAGCGGCGTGAAGGTCCGGTCCAAGTGG
CTGCGCGAAAAGCCTTATAACGGAGGAAGGCCTTGCCCCAAACTGGACCATGTCAACCAGGCACAGGTGT
ACGAGGTCGTCCCATGCCACAGTGACTGTAACCAGTACATATGGGTCACAGAGCCATGGAGTGTCTGCAA
GGTGACCTTTGTGGACATGCGAGACAACTGCGGAGAAGGTGTGCAGACCCGAAAAGTGAGATGCATGCAG
AATACAGCAGATGGCCCTTCTGAACATGTGGAGGATTACCTGTGTGACCCAGAAGATATGCCCCTGGGCT
CTAGAGAGTGTAAACTCCCATGCCCTGAGGACTGTGTCATATCTGAGTGGGGACCATGGACCCAGTGTGC
TTTGCCTTGCAATCCAAGTGGTTCGAGGCAAAGGTCAGCCGATCCCATCAGACAGCCTGCTGATGAAGGA
AGAGCCTGCCCTGATGCTGTGGAGAAAGAGCCCTGTAGCCTGAACAAAAATTGTTACCACTATGACTATA
ATGTCACAGACTGGAGTACGTGTCAGCTGAGCGAGAAGGCAGTTTGTGGGAATGGCATTAAAACAAGGAT
GTTGGACTGTGTTCGAAGTGATGGCAAGTCCGTTGACCTAAAGTACTGTGAAGAGCTTGGGCTGGAAAAG
AATTGGCCAATGAACACATCCTGCACAGTGGAATGCCCTGTGAACTGCCAGCTTTCTGACTGGTCTTCTT
GGTCACAATGTTCTCAAACATGTGGACTCACAGGAAAAATGATACGAAAACGAACTGTAACCCAGCCCTT
TCAAGGTGATGGGAGGCCCTGCCCTTCTCTGATGGAACAGTCCAAGCCTTGCCCAGTGAAGCCATGTTAT
CGGTGGCAATATGGCCAGTGGTCTCCATGCCAAGTTCAGGAGGCCCAGTGTGGAGAAGGAACCAGGACAC
GGAATATTTCTTGTGTTGTGAGTGATGGCTCAGCTGAGGATTTCAGCAAAGTGGTGGACGAAGAGTTCTG
TGCTAACACAGAGCTCATCATAGATGGTAATAAACAAATAGTTTTGGAGGAAACCTGCACCCAGCCCTGC
CCAGGTGACTGTTATTTGAATGACTGGTCTTCATGGAGTCTGTGTCAGCTGACCTGTGTAAATGGTGAGG
ATCTTGGCTTTGGTGGAATACAAGTCCGGTCCAGAGCAGTGATTATACAAGAACTGGAGAATCAACACCT
ATGTCCAGAGCAGATGTTAGAAACAAAATCATGTGATGACGGACAATGCTATGAGTACAAGTGGGTGGCA
AGTGCTTGGAAGGGCTCCTCTCGGACAGTCTGGTGTCAAAGATCAGATGGCATAAACGTAACAGGGGGCT
GCTTGGTGGTGAGCCAGCCTGATACTGACAGGTCTTGTAACCCACCCTGTAGTCAACCGCACTCATATTG
TAGTGAGATGAAGACCTGCCGCTGTGAAGAAGGGTACACTGAAGTCATGTCCTCTAACAGCACCCTTGAG
CAATGCACACTTATTCCCGTGGTGGTGATTCCCACTGTGGAGGATAAAAGAGGAGATGTGAAAACCAGCC
GGGCAGTTCACCCAACCCAGCCCTCCATTAACCCAGCAGGACGGGGCAGGACATGGTTTCTACAGCCATT
TGGGCCAGATGGAAGATTAAAGACCTGGGTTTATGGTGTCGCAGCCGGGGCATTTGTGCTGTTAGTCTTC
ATTGTCTCCATGATTTATCTAGCGTGCAAAAAGCCAAAGAAACCCCAAAGACGGCAGAACAACCGCCTCA
AACCTTTAACCTTAGCATACGATGGAGACGCTGATATGTAA

Translation (1646 aa):
MGLRAGRLASPSRGVLQLLRLPLLLLLLLSSGARGAAAQGDTEVPTLYLWKTGPWGRCMGDDCGPGGIQT
RAVWCAHVEGWTTLHTNCKQAVRPSNQQNCFKVCDWHKELYDWRLGTWDRCQPVISKSLEKSRECVKGEE
GIQVREIMCIQKDKDIPAEDIICEYFEPKPLLEQACLIPCQKDCIVSEFSPWSECSRTCGSGLQHRTRHV
VAPPQYGGSGCPNLTEFQVCQSNPCEEDESLYSLQVGPWSACSVPHTRQARQARRRGKNKEREKERGKAV
KDPEARELIKKKRNRNRQNRQENRYWDIQIGYQTRDVTCLNRTGKSADLSFCQQERLPMTFQSCVITKEC
QVSEWLEWSPCSKTCHDVTSPTGTRVRTRTITQFPIGSEKECPALEEKEPCVSQGDGAVLCATYGWRTTE
WTECHVDPLLSQQDKRRANQTALCGGGVQTREIYCIQTNDNMLSHGNTQKDKEASKPVDSKLCTGPVPNT
TQLCHVPCPIECEVSPWSAWGPCTYENCNDQQGKKGFKLRKRRITNEPTGGSGATGNCPHLLEAIPCEEP
SCYDWKSVRLGDCEPDNGKSCGPGTQVQEVVCINSDGEEVDRQLCRDAIFPIPVACDAPCPKDCVLSAWS
SWSSCSHTCSGKTTEGKQTRARSILAYAGEEGGIRCPNISALQEVRSCNEHPCTVYHWQTGPWGQCIEDT
SVSSFNTTTTWNGEASCSVGMQTRKVICVRVNVGQVGPKKCPESLRPETVRPCLLPCRKDCVVTPYSDWT
PCPSSCREGDSGARKQSRQRVIIQLPANGGKECSDPLYEEKACEAPPTCHSYRWKTHKWRRCQLVPWSIQ
QDVPGAQEGCGPGRQARAITCRKQDGGQASIQECLQYAGPVPALTQACQIPCQDDCQFTSWSKFSSCNGD
CGAVRTRKRAIVGKSKKKEKCKNSHLYPLIETQYCPCDKYNAQPVGNWSDCILPEGKAEVLLGMKVQGDS
KECGQGYRYQAMACYDQNGRLVETSRCNSHGYIEEACIIPCPSDCKLSEWSNWSRCSKSCGSGVKVRSKW
LREKPYNGGRPCPKLDHVNQAQVYEVVPCHSDCNQYIWVTEPWSVCKVTFVDMRDNCGEGVQTRKVRCMQ
NTADGPSEHVEDYLCDPEDMPLGSRECKLPCPEDCVISEWGPWTQCALPCNPSGSRQRSADPIRQPADEG
RACPDAVEKEPCSLNKNCYHYDYNVTDWSTCQLSEKAVCGNGIKTRMLDCVRSDGKSVDLKYCEELGLEK
NWPMNTSCTVECPVNCQLSDWSSWSQCSQTCGLTGKMIRKRTVTQPFQGDGRPCPSLMEQSKPCPVKPCY
RWQYGQWSPCQVQEAQCGEGTRTRNISCVVSDGSAEDFSKVVDEEFCANTELIIDGNKQIVLEETCTQPC
PGDCYLNDWSSWSLCQLTCVNGEDLGFGGIQVRSRAVIIQELENQHLCPEQMLETKSCDDGQCYEYKWVA
SAWKGSSRTVWCQRSDGINVTGGCLVVSQPDTDRSCNPPCSQPHSYCSEMKTCRCEEGYTEVMSSNSTLE
QCTLIPVVVIPTVEDKRGDVKTSRAVHPTQPSINPAGRGRTWFLQPFGPDGRLKTWVYGVAAGAFVLLVF
IVSMIYLACKKPKKPQRRQNNRLKPLTLAYDGDADM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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