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Report for CCDS51789.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51789.1 Public Mus musculus 6 Avl9 23 108 98 CCDS HistoryNCBI Gene:78937Re-query CCDS DB by CCDS ID:51789.1Re-query CCDS DB by GeneID:78937See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51789.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031805.10 ENSMUSP00000031805.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031805.10Link to Ensembl Protein Viewer:ENSMUSP00000031805.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031805Re-query CCDS DB by Protein ID:ENSMUSP00000031805
Original member Current member NCBI NM_030235.1 NP_084511.1 Accepted alive Link to Nucleotide Sequence:NM_030235.1Link to Protein Sequence:NP_084511.1Re-query CCDS DB by Nucleotide ID:NM_030235Re-query CCDS DB by Protein ID:NP_084511Link to BLAST:NP_084511.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084511.1 649 Q80U56 649 100% 0 0

Chromosomal Locations for CCDS 51789.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 56715122 56715214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56723476 56723596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56725076 56725161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56726251 56726322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56728188 56728277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56728597 56728663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56729720 56729760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56730642 56730680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56735363 56735432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56736438 56736976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56741369 56741503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56743332 56743551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56746281 56746398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56753365 56753418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56753838 56753926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56757272 56757387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1950 nt):
ATGGAGAAGTCTGGGCGTGAGAGTGACGGCGCCCCCTGCGGGCCTGTCCTGCACATCGTGGTGGTCGGCT
TTCACCACAAGAAGGGCTGCCAGGTTGAATTCTCTTACCCACCACTAATTCCAGGAGATGGACATGATAG
CCACACTTTACCTGAAGAATGGAAGTACTTGCCTTTCCTTGCCTTACCAGATGGTGCACATAACTATCAG
GAAGATACTGTGTTTTTTCACTTGCCACCCAGAAATGGAAATGGAGCCACAGTATATGGTATCTCTTGTT
ATCGACAAATTGAAGCCAAGGCATTAAAAGTGAGGCAAGCCGACATCACCAGAGAGACTGTTCAGAAAAG
TGTCTGTGTTTTAAGCAAGCTGCCTCTTTATGGCTTACTTCAAGCAAAACTCCAACTCATTACACATGCA
TATTTTGAAGAAAAAGATTTTTCCCAAATTTCCATTCTAAAGGAGCTCTATGAACATATGAACAGTTCCT
TGGGAGGGGCCTCATTAGAAGGATCGCAGGTGTATCTTGGTTTGTCTCCTCGAGATCTTGTCCTTCATTT
TCGACACAAGGTCTTGATCCTGTTTAAGCTAATTCTTCTTGAAAAGAAGGTTCTGTTTTACATTTCTCCA
GTGAATAGATTGGTGGGTGCACTAATGACTGTGTTATCCCTTTTTCCAGGCATGATTGAGCATGGCCTCA
GTGACTGTTCTCAGTATAGACCTCGAAAGAGTATGTCTGAAGATGCTGGACCTCAGGAAAGTAATCCCTC
TGCAGATGATTTTACTTCTGAGTCTACTTCTGACGTCTTAAATACCAGCTTGGAAACTGTCACAAGAGTC
ATGGCAGTAAACCATGGCGAAGATGCTGTGCCCAAGACGGAGAAGCCTTACTTCCAAGTAGAAGGTAACA
ACAACAAAGGACAGGAACCCAGTGATTCTGGCCGATATTTGGAACTTCCACCCCGTCCATCTCCAGAGTC
TTCAGAAAGTGACTGGGAAACGTTGGATCCTAGTGTCTTAGAGGATGCCAGCTTGAAAGAAAGGGAGCAG
ATGGGGTCAGACCAGACACACTTATTCCAAAAGGACTCTCTGCCCTCGGACAGTCCTCCAATTACTGTAC
AGCCTCAAGCTAATAACAGGCAGGTGGTCCTGATACCAGGGCTCATTTCTGGTTTGGAAGAAGACCAATA
TGGCATGCCTCTGGCCATCTTTACAAAGGGATATCTGTGTTTGCCTTACATGGCATTGCAGCAGCATCAT
CTTCTCTCTGATGTCACTGTTCGGGGATTTGTGGCTGGAGCTACTAACATCCTTTTCCGACAACAGAAGC
ACCTCAGTGATGCCATTGTGGAAGTGGAAGAAGCACTGATCCAGATCCACGATCCAGAACTTAGGAAGCT
GCTTAACCCAACGACGGCTGACCTAAGGTTCGCAGACTACCTGGTGAGGCACGTGACTGAGAACCGGGAC
GATGTCTTCCTGGATGGCACCGGCTGGGAGGGTGGTGACGAATGGATCCGGGCCCAGTTTGCAGTCTACA
TCCACGCTCTCCTGGCTGCTACACTGCAGTTAGATAATGAAAAGATGTTATCAGACTATGGAACAACTTT
TGTTGCCGCCTGGAAGAATACTCACAACTACAGGGTATGGAACAGCAATAAGCATCCGGCACTTTCAGAG
ATAAATCCAAACCATCCTTTTCAAGGCCAGTACTCCGTGTCAGACATGAAACTCAGATTCTCACATTCTG
TTCAGAATAGTGAACGTGGCAAAAAAATTGGCAGTGTCATGGTCACAACCAGCCGGAATGTGGTACAAAC
AGGAAAAGCCGTTGGCCAATCAGTTGGAGGAGCTTTTTCCAGTGCAAAGACAGCTATGTCTTCATGGCTA
TCTACTTTCACCACATCCACCCCTCAGAGTCTTCCTGAGCCACCCAATGGGAAGCCCTGA

Translation (649 aa):
MEKSGRESDGAPCGPVLHIVVVGFHHKKGCQVEFSYPPLIPGDGHDSHTLPEEWKYLPFLALPDGAHNYQ
EDTVFFHLPPRNGNGATVYGISCYRQIEAKALKVRQADITRETVQKSVCVLSKLPLYGLLQAKLQLITHA
YFEEKDFSQISILKELYEHMNSSLGGASLEGSQVYLGLSPRDLVLHFRHKVLILFKLILLEKKVLFYISP
VNRLVGALMTVLSLFPGMIEHGLSDCSQYRPRKSMSEDAGPQESNPSADDFTSESTSDVLNTSLETVTRV
MAVNHGEDAVPKTEKPYFQVEGNNNKGQEPSDSGRYLELPPRPSPESSESDWETLDPSVLEDASLKEREQ
MGSDQTHLFQKDSLPSDSPPITVQPQANNRQVVLIPGLISGLEEDQYGMPLAIFTKGYLCLPYMALQQHH
LLSDVTVRGFVAGATNILFRQQKHLSDAIVEVEEALIQIHDPELRKLLNPTTADLRFADYLVRHVTENRD
DVFLDGTGWEGGDEWIRAQFAVYIHALLAATLQLDNEKMLSDYGTTFVAAWKNTHNYRVWNSNKHPALSE
INPNHPFQGQYSVSDMKLRFSHSVQNSERGKKIGSVMVTTSRNVVQTGKAVGQSVGGAFSSAKTAMSSWL
STFTTSTPQSLPEPPNGKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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