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Report for CCDS51876.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51876.1 Public Mus musculus 6 Pparg 23 108 98 CCDS HistoryNCBI Gene:19016Re-query CCDS DB by CCDS ID:51876.1Re-query CCDS DB by GeneID:19016See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51876.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171644.7 ENSMUSP00000131962.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171644.7Link to Ensembl Protein Viewer:ENSMUSP00000131962.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171644Re-query CCDS DB by Protein ID:ENSMUSP00000131962
Original member Current member EBI ENSMUST00000203732.2 ENSMUSP00000145525.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203732.2Link to Ensembl Protein Viewer:ENSMUSP00000145525.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203732Re-query CCDS DB by Protein ID:ENSMUSP00000145525
Original member NCBI NM_001127330.2 NP_001120802.1 Updated not alive Link to Nucleotide Sequence:NM_001127330.2Link to Protein Sequence:NP_001120802.1Re-query CCDS DB by Nucleotide ID:NM_001127330Re-query CCDS DB by Protein ID:NP_001120802
Current member NCBI NM_001127330.3 NP_001120802.1 Accepted alive Link to Nucleotide Sequence:NM_001127330.3Link to Protein Sequence:NP_001120802.1Re-query CCDS DB by Nucleotide ID:NM_001127330Re-query CCDS DB by Protein ID:NP_001120802Link to BLAST:NP_001120802.1
Original member NCBI NM_001308352.1 NP_001295281.1 Updated not alive Link to Nucleotide Sequence:NM_001308352.1Link to Protein Sequence:NP_001295281.1Re-query CCDS DB by Nucleotide ID:NM_001308352Re-query CCDS DB by Protein ID:NP_001295281
Current member NCBI NM_001308352.2 NP_001295281.1 Accepted alive Link to Nucleotide Sequence:NM_001308352.2Link to Protein Sequence:NP_001295281.1Re-query CCDS DB by Nucleotide ID:NM_001308352Re-query CCDS DB by Protein ID:NP_001295281Link to BLAST:NP_001295281.1
Original member NCBI NM_001308354.1 NP_001295283.1 Updated not alive Link to Nucleotide Sequence:NM_001308354.1Link to Protein Sequence:NP_001295283.1Re-query CCDS DB by Nucleotide ID:NM_001308354Re-query CCDS DB by Protein ID:NP_001295283
Current member NCBI NM_001308354.2 NP_001295283.1 Accepted alive Link to Nucleotide Sequence:NM_001308354.2Link to Protein Sequence:NP_001295283.1Re-query CCDS DB by Nucleotide ID:NM_001308354Re-query CCDS DB by Protein ID:NP_001295283Link to BLAST:NP_001295283.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120802.1 475 P37238-2 475 99.7895% 0 1
NP_001295281.1 475 P37238-2 475 99.7895% 0 1
NP_001295283.1 475 P37238-2 475 99.7895% 0 1

Chromosomal Locations for CCDS 51876.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 115439848 115440067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115441492 115441661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115450944 115451082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115463086 115463285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115472861 115473311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115489948 115490195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGTTGACACAGAGATGCCATTCTGGCCCACCAACTTCGGAATCAGCTCTGTGGACCTCTCCGTGATGG
AAGACCACTCGCATTCCTTTGACATCAAGCCCTTTACCACAGTTGATTTCTCCAGCATTTCTGCTCCACA
CTATGAAGACATTCCATTCACAAGAGCTGACCCAATGGTTGCTGATTACAAATATGACCTGAAGCTCCAA
GAATACCAAAGTGCGATCAAAGTAGAACCTGCATCTCCACCTTATTATTCTGAAAAGACCCAGCTCTACA
ACAGGCCTCATGAAGAACCTTCTAACTCCCTCATGGCCATTGAGTGCCGAGTCTGTGGGGATAAAGCATC
AGGCTTCCACTATGGAGTTCATGCTTGTGAAGGATGCAAGGGTTTTTTCCGAAGAACCATCCGATTGAAG
CTTATTTATGATAGGTGTGATCTTAACTGCCGGATCCACAAAAAAAGTAGAAATAAATGTCAGTACTGTC
GGTTTCAGAAGTGCCTTGCTGTGGGGATGTCTCACAATGCCATCAGGTTTGGGCGGATGCCACAGGCCGA
GAAGGAGAAGCTGTTGGCGGAGATCTCCAGTGATATCGACCAGCTGAACCCAGAGTCTGCTGATCTGCGA
GCCCTGGCAAAGCATTTGTATGACTCATACATAAAGTCCTTCCCGCTGACCAAAGCCAAGGCGAGGGCGA
TCTTGACAGGAAAGACAACGGACAAATCACCATTTGTCATCTACGACATGAATTCCTTAATGATGGGAGA
AGATAAAATCAAGTTCAAACATATCACCCCCCTGCAGGAGCAGAGCAAAGAGGTGGCCATCCGAATTTTT
CAAGGGTGCCAGTTTCGATCCGTAGAAGCCGTGCAAGAGATCACAGAGTATGCCAAAAATATCCCTGGTT
TCATTAACCTTGATTTGAATGACCAAGTGACTCTGCTCAAGTATGGTGTCCATGAGATCATCTACACGAT
GCTGGCCTCCCTGATGAATAAAGATGGAGTCCTCATCTCAGAGGGCCAAGGATTCATGACCAGGGAGTTC
CTCAAAAGCCTGCGGAAGCCCTTTGGTGACTTTATGGAGCCTAAGTTTGAGTTTGCTGTGAAGTTCAATG
CACTGGAATTAGATGACAGTGACTTGGCTATATTTATAGCTGTCATTATTCTCAGTGGAGACCGCCCAGG
CTTGCTGAACGTGAAGCCCATCGAGGACATCCAAGACAACCTGCTGCAGGCCCTGGAACTGCAGCTCAAG
CTGAATCACCCAGAGTCCTCTCAGCTGTTCGCCAAGGTGCTCCAGAAGATGACAGACCTCAGGCAGATCG
TCACAGAGCACGTGCAGCTACTGCATGTGATCAAGAAGACAGAGACAGACATGAGCCTTCACCCCCTGCT
CCAGGAGATCTACAAGGACTTGTATTAG

Translation (475 aa):
MVDTEMPFWPTNFGISSVDLSVMEDHSHSFDIKPFTTVDFSSISAPHYEDIPFTRADPMVADYKYDLKLQ
EYQSAIKVEPASPPYYSEKTQLYNRPHEEPSNSLMAIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLK
LIYDRCDLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAEKEKLLAEISSDIDQLNPESADLR
ALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIF
QGCQFRSVEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTREF
LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLK
LNHPESSQLFAKVLQKMTDLRQIVTEHVQLLHVIKKTETDMSLHPLLQEIYKDLY


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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