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Report for CCDS51884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51884.1 Public Mus musculus 6 Zfp248 23 108 98 CCDS HistoryNCBI Gene:72720Re-query CCDS DB by CCDS ID:51884.1Re-query CCDS DB by GeneID:72720See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51884.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069292.13 ENSMUSP00000068807.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069292.13Link to Ensembl Protein Viewer:ENSMUSP00000068807.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000069292Re-query CCDS DB by Protein ID:ENSMUSP00000068807
Original member Current member NCBI NM_028335.2 NP_082611.1 Accepted alive Link to Nucleotide Sequence:NM_028335.2Link to Protein Sequence:NP_082611.1Re-query CCDS DB by Nucleotide ID:NM_028335Re-query CCDS DB by Protein ID:NP_082611Link to BLAST:NP_082611.1

Chromosomal Locations for CCDS 51884.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 118428896 118430394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118432857 118432946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118433305 118433431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118453846 118453860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1731 nt):
ATGAACAAATCCCAGGAGCAAGTGTCGTTCAAGGATGTATGCGTGGATTTCACCAAGGAAGAGTGGTATT
TGCTGGACCCTGCCCAGAAGGTGCTTTACAGAGATGTGATCCTGGAGAATTATAGCAACTTCGTCTCCGT
AGGGCATTGTGTTACTAAGCCAGATGTAATCTTCAAGATAGAGCAAGGAGAAGATCCCTGGATACCAGAA
AATGGATTCCAGTGCCACCCAGAAAGGAAATGGAAAGTGGACGACCTATTAGAGAGCAACCAGGAAAATC
AAGATGGACATTTTTGGCCACTCATGTTCACCAACAAGATCACAAACCTAGAGGGTGGAGGTAACACAAG
AGAAACTCCCAGTCCAGACATTGACTCTGTATCTTCAAGAAGTTTTCTGCTCAAAGTATGTGACTCATGT
GAAATGAATTTAAAGAATGTTTCAGCTGTAATTATTAGCAAAAAGAACTATTCCAGAAAGAAGCTTAACG
AGTTTAATATACATAAGAAACCACTCCCTGACAGTAGGCGTGAGAAGATTCCTGTAGGAATAAAGTCATG
TGACTATGATGGGGAAAGGGATGGCGTCCGTCTGTGCCGGGATCTCGCTCGGCCAGTTTCTCATCAGCCT
TTTGAGTATAACGAAACAGGACAAGGCTTCTGCGAGGAAGTGGCCCTTTGTACAAGTCAGAACTCTCAGC
TAGGGGAGACTCTCTATAAGCACACTGAATGTGGAAGAACTTTCGTTGACAGTTTGAAGCTTAGTGTATC
TCAGAAAACACGTTTGCATACAGAACTTCATGAGTGCAGTATTTGTAGAAAGTCCTTCTATGTGGATTTG
CAGTTTGGACATCACACAGCTCTCTCAGGAAGCAGTCCTTACGAGCGTAACGAATATGAGAAACTCTTCT
GTGACGGTACAGCTTTCATCGTCCATCAGGAAGCTTACACGAGAAAGATCGCCCAAGAGTATAAAGTGAG
TAACAGAACTTGGGGAAAGCCAGCTCTCTTCAAACATCAGATAATACAGATGGGAGGGAAACCCTATGAA
TACTATGAAAACAGGAAAAATTTCAGCAAAAAATCACATCCCACCCAGCCTCGAAGACCTCACGTGGGAG
AAAAGACGTTTGAATGTGGTGAATGTGGTAAAATGTTTTGGGAGAAATCGAACCTTACCCAGCATCAGAG
AACACACACCGGAGAGAAACCGTATGAGTGTACCGAATGTGGGAAAGCCTTCTGCCAGAAGCCACACCTT
ACCAACCATCAGCGGACACACACGGGAGAGAAACCCTATGAGTGCAAGCAATGCGGAAAGACGTTCTGTG
TCAAGTCAAACCTTACTGAGCATCAAAGGACACACACTGGGGAGAAACCCTATGAATGCAACGCATGTAG
GAAGTCCTTCTGCCACCGGTCAGCCCTAACTGTCCATCAGAGAACACATACAGGAGAGAAACCATTCATA
TGCAGTGAGTGCGGGAAGTCGTTTTGTGTGAAGTCAAACCTGATTGTCCATCAGCGAACTCATACAGGGG
AGAAACCCTACAAGTGCAACGAGTGTGGGAAAACGTTCTGTGAGAAATCGGCGCTCACCAAACACCAGAG
AACTCACACAGGGGAGAAACCCTATGAATGTCACGTGTGTGGGAAGACCTTCAGTCAGAGGTCGGTACTT
ACCAAGCATCTGAGAATCCACACGAGGGTGAAAGCTCTTTTAGCATCCTGA

Translation (576 aa):
MNKSQEQVSFKDVCVDFTKEEWYLLDPAQKVLYRDVILENYSNFVSVGHCVTKPDVIFKIEQGEDPWIPE
NGFQCHPERKWKVDDLLESNQENQDGHFWPLMFTNKITNLEGGGNTRETPSPDIDSVSSRSFLLKVCDSC
EMNLKNVSAVIISKKNYSRKKLNEFNIHKKPLPDSRREKIPVGIKSCDYDGERDGVRLCRDLARPVSHQP
FEYNETGQGFCEEVALCTSQNSQLGETLYKHTECGRTFVDSLKLSVSQKTRLHTELHECSICRKSFYVDL
QFGHHTALSGSSPYERNEYEKLFCDGTAFIVHQEAYTRKIAQEYKVSNRTWGKPALFKHQIIQMGGKPYE
YYENRKNFSKKSHPTQPRRPHVGEKTFECGECGKMFWEKSNLTQHQRTHTGEKPYECTECGKAFCQKPHL
TNHQRTHTGEKPYECKQCGKTFCVKSNLTEHQRTHTGEKPYECNACRKSFCHRSALTVHQRTHTGEKPFI
CSECGKSFCVKSNLIVHQRTHTGEKPYKCNECGKTFCEKSALTKHQRTHTGEKPYECHVCGKTFSQRSVL
TKHLRIHTRVKALLAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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