NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51886.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51886.2 Public Mus musculus 6 Cacna2d4 23 108 98 CCDS HistoryNCBI Gene:319734Re-query CCDS DB by CCDS ID:51886.2Re-query CCDS DB by GeneID:319734See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 51886.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238905.1 ENSMUSP00000158949.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238905.1Link to Ensembl Protein Viewer:ENSMUSP00000158949.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238905Re-query CCDS DB by Protein ID:ENSMUSP00000158949
Original member Current member NCBI NM_001033382.3 NP_001028554.3 Accepted alive Link to Nucleotide Sequence:NM_001033382.3Link to Protein Sequence:NP_001028554.3Re-query CCDS DB by Nucleotide ID:NM_001033382Re-query CCDS DB by Protein ID:NP_001028554Link to BLAST:NP_001028554.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028554.3 1116 Q5RJF7-1 1116 100% 0 0

Chromosomal Locations for CCDS 51886.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 119236706 119236869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119239022 119239103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119240665 119240781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119241153 119241212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119242778 119242940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119244199 119244330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119267807 119267867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119268196 119268346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119270754 119270828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119271216 119271305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119271409 119271522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119271873 119271951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119274225 119274358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119277062 119277139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119277820 119277900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119278189 119278263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119281620 119281706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119282179 119282250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119297478 119297539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119298430 119298497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119300209 119300254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119300328 119300425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119302026 119302119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119307246 119307341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119308677 119308804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119312423 119312503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119336391 119336452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119337882 119337926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119338115 119338177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119343530 119343600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119343967 119344042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119344528 119344580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119345044 119345096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119345430 119345450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119347134 119347251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119348726 119348838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119349095 119349177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119350031 119350135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3351 nt):
ATGGCAAGATGCCCCATGCTGTCCTCTAGCCACAACCAAGACCACAGTGGACGGTGGACAGCAGTGTGGA
CCTCCCTGTGGAAGACGCCAATCATCCTGTGGCTGCTGCTCTCGGACACCTCCCTGCCTACCGTGAGGGG
CCAGACCACAGTTCCTCTGGAAACAGTGAAGCTGTGGGCCGATACCTTCGGCAGGAATCTGTACAACACG
GTGACCAGATATTCAGGCTCCCTCCTGCTGCAGAAGAAGTACAAGGATGCAGAACCCAGTCTGAAGATCA
AAGAGGTGGATGGCTTGGAGCTGGTGAAGAAGTTCTCGGAGGACATGGAGACCATGCTTCGGAGGAAAGT
CGAGGCTGTTGAGAGCCTGGTGGAGGCCGCTGAGGAGGCTGACCTGAATCATGAGTTCAATGCATCTCTG
GTGTTTAACTACTACAACTCGGTACTAATCAATGAGAAGGATGACAAGGGCAACTACGTGGAGCTGGGAG
CTGAGTTTCTTCTCGAGTCCGACGCGCACTTCAGCAACCTGAGGGTGAATGTCTCCATGAGCAGCGTTCA
ACTGCCCACCAACGTGTACAACAAAGACCCAGACATTTTAAATGGCGTGTATATGTCCGAAGCCCTGAAC
CCCGTGTTTGTGGAGAACTTTCAGAGAGACCCTACATTGACATGGCAGTATTTCGGCAGCTCAACTGGGT
TCTTCAGGATCTATCCAGGAATAAAGTGGATGCCTGATGAAAACGGAGTCATCGCCTTCGACTGCAGAAA
CCGTGGCTGGTACATACAAGCTGCCACATCTCCCAAAGACATCGTAATTCTGGTGGACATTAGCGGCAGC
ATGAAGGGGCTGAGGATGGCTATCGCCAAGCACACCATTACCACCATATTGGACACCCTGGGAGAGAACG
ACTTCGTGAACATCATCGCGTACAATGACTACGTCCACTACATTGAGCCCTGCTTCAAAGGCATCCTTGT
CCAAGCAGATCGAGACAACCGAGAGCATTTCAAGCAGTTGGTGGATGAGCTGATGGTCAAAGGTGTGGGT
GTCGTGAGTCAAGCTCTAATTGAAGCTTTCGAGATCCTGAAACAGTTCCAAGAGTCCAAACAAGGAAGTC
TCTGCAACCAGGCCATCATGCTTATCACCGATGGGGCTGTGGAAGACTATGAGCCCGTGTTTGAGACCTA
TAACTGGCCAGACCGAAAGGTCCGAGTTTTCACTTACCTTATTGGAAGAGAAGTGACTTTCGCTGACCGC
ATGAAGTGGATCGCCTGCAACAATAAAGGCTACTACACACAGATCTCCACACTGGCGGATGCGCAGGAGA
GCGTGATGGAGTACCTGCATGTGCTTAGCCGCCCCATGGTCATCAACCATGACCACGACATCATCTGGAC
AGAGGCTTACATGGACAGCCGGCTCTTCACATCAGAGGCACAGAGCCTGATGCTCCTCACCACAGTGGCC
ATGCCTGTCTTCAGCAAAAAGAATGAAACAAGATCCCATGGCATTCTCCTGGGTGTAGTGGGCTCTGACG
TGACCCTAAGAGAGCTCATGAAGCTGGCACCCCGATATAAGCTTGGGGTGCATGGCTATGCCTTCTTGAA
CACTAACAATGGCTACATCCTCTCTCATCCTGACCTCCGACCTTTGTACAGAGAAGGCAAGAAGCTGAGA
CCCAAACCCAACTACAACAGTGTGGACCTCTCAGAAGTGGAGTGGGAGGACCAAGCTGAAATTCTGAGGA
CCGCCATGATCAATGGGGAAACCGGGTCTCACTCCATGGACGTGAAGGTGCCACTGGACAAAGGGAAGCG
AGTTCTATTCCTGACCAATGACTACTTCTTCACAGACATCAGTGACACACCTTTCAGCCTGGGAGTGGTG
CTCACCAGAGGTCATGGAGAATACATCCTCCTGGGGAACACATCTGTGGAAGAAGGCCTGCACGACTTGC
TTCATCCGGATCTGACCCTGGCCAGTGACTGGATCTACTGTATCACAGATATCGACCCGGACCACCGGAA
ACTCAGCCAACTGGAAGCTGTGGTTCGTTTCCTGACAGGGGTGGATCCAGACCTGGAGTGTGACGAGGAA
CTGGTGCGGGAGGTGCTGTTTGATGCGGTGGTAACCGCCCCCATGGAAGCCTATTGGACAGCACTGGCAC
TCAACATCTCTGAAGAGTCAGAGCCTGGCGTGGATGTGGCCTTCCTGGGAACCCGGGCTGGCCTTCTAAG
AAGAAGCTTGTTCGTAGGCTCCGAGAAAGTCTCTGACAGGAAGTTCCTGACCCCTGAAGATGAAGCCAGT
ATTTTTACCATGGACCACTTCCCGCTGTGGTATCGCCAGGCCTCTGAGCAGCCCCCCGGCAGCTTTGTCT
TCAATCTCCGCTGGGCAGAGGGACCAGATAGCCCAGGCAAGCCAGTGGCGGTAAGGGCCAGCACAGCAGT
AACTGTGACCGTGGATGGGAAGACGGCCATTGCAGCAGCTGTGGGCATCCAGATGCAAGCAGACTACCTC
CAGCGCCAGTTCTGGGCAGCCATGCAGCAGTGCAACGCTGTAGAGGGGCCGTGCCTGAAGAGCTGCGAGG
ACACTGATCTCGACTGCTTCGTCATAGACAACAATGGCTTCGTCCTGATCTCAGAGAGACCCCAAGAGAT
GGGAAGACTTCTGGGGGAAGCGGATGGTGCTCTCATGAAGCAACTTCTCAGCATGGGGGTGTTCAGCCGT
GTGACCATGTATGACTACCAGGCCATGTGCAAGCCCCCAGATCATCACCACAGTGCGGCCGAATCCCTGT
TCAGTCCTCTCTCTGCCTTCTTGATGGTGGCCAGGTGGCTACTGCATGAATGTCTCCTATTCCTGTTAGA
GTGGAGTGCCTGGGGATCTTGGCAGGACAAAGGGTCAGAGGCCAAATCTGTCTTCCATCACTCCCACAAG
CACAAGAAGCAGGACCTGCTGCACCCCTGTGACACAGAGTACCCAGTGTTCGTGCATCAGACGGCCATCC
AGGAAGCCAATGGCATCATCGAGTGTGGGGGCTGCCAGAAGACATTCGTGATGCAACAGATTCCCCGAAG
CAACCTGCTCCTGCTCGTGACAGACCGCACCTGTGACTGCAGCGCCCACTCTCCCATCCTCCAGGAGGCC
ACAGAAGTCAAATATAATGCCTCTGTCAAGTGTGACAGGATGCGCTCCCAGAAGCCCCGGAGACGACCAG
GCTCCTGCCATGCCTTCCATCCAGAGGAGAATGCCCAGGACTGTGGCGGTGCTTCAGACACTCTGCCTTC
ATCCCCTCTGCTCCTGCTATCACTGGGGGCCTGGCTGCTTCCACCCCAGCTTCTGTGGTGA

Translation (1116 aa):
MARCPMLSSSHNQDHSGRWTAVWTSLWKTPIILWLLLSDTSLPTVRGQTTVPLETVKLWADTFGRNLYNT
VTRYSGSLLLQKKYKDAEPSLKIKEVDGLELVKKFSEDMETMLRRKVEAVESLVEAAEEADLNHEFNASL
VFNYYNSVLINEKDDKGNYVELGAEFLLESDAHFSNLRVNVSMSSVQLPTNVYNKDPDILNGVYMSEALN
PVFVENFQRDPTLTWQYFGSSTGFFRIYPGIKWMPDENGVIAFDCRNRGWYIQAATSPKDIVILVDISGS
MKGLRMAIAKHTITTILDTLGENDFVNIIAYNDYVHYIEPCFKGILVQADRDNREHFKQLVDELMVKGVG
VVSQALIEAFEILKQFQESKQGSLCNQAIMLITDGAVEDYEPVFETYNWPDRKVRVFTYLIGREVTFADR
MKWIACNNKGYYTQISTLADAQESVMEYLHVLSRPMVINHDHDIIWTEAYMDSRLFTSEAQSLMLLTTVA
MPVFSKKNETRSHGILLGVVGSDVTLRELMKLAPRYKLGVHGYAFLNTNNGYILSHPDLRPLYREGKKLR
PKPNYNSVDLSEVEWEDQAEILRTAMINGETGSHSMDVKVPLDKGKRVLFLTNDYFFTDISDTPFSLGVV
LTRGHGEYILLGNTSVEEGLHDLLHPDLTLASDWIYCITDIDPDHRKLSQLEAVVRFLTGVDPDLECDEE
LVREVLFDAVVTAPMEAYWTALALNISEESEPGVDVAFLGTRAGLLRRSLFVGSEKVSDRKFLTPEDEAS
IFTMDHFPLWYRQASEQPPGSFVFNLRWAEGPDSPGKPVAVRASTAVTVTVDGKTAIAAAVGIQMQADYL
QRQFWAAMQQCNAVEGPCLKSCEDTDLDCFVIDNNGFVLISERPQEMGRLLGEADGALMKQLLSMGVFSR
VTMYDYQAMCKPPDHHHSAAESLFSPLSAFLMVARWLLHECLLFLLEWSAWGSWQDKGSEAKSVFHHSHK
HKKQDLLHPCDTEYPVFVHQTAIQEANGIIECGGCQKTFVMQQIPRSNLLLLVTDRTCDCSAHSPILQEA
TEVKYNASVKCDRMRSQKPRRRPGSCHAFHPEENAQDCGGASDTLPSSPLLLLSLGAWLLPPQLLW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH