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Report for CCDS51918.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51918.1 Public Mus musculus 6 Klrb1a 23 108 98 CCDS HistoryNCBI Gene:17057Re-query CCDS DB by CCDS ID:51918.1Re-query CCDS DB by GeneID:17057See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51918.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171306.4 ENSMUSP00000132390.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171306.4Link to Ensembl Protein Viewer:ENSMUSP00000132390.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000171306Re-query CCDS DB by Protein ID:ENSMUSP00000132390
Original member Current member NCBI NM_001159902.1 NP_001153374.1 Accepted alive Link to Nucleotide Sequence:NM_001159902.1Link to Protein Sequence:NP_001153374.1Re-query CCDS DB by Nucleotide ID:NM_001159902Re-query CCDS DB by Protein ID:NP_001153374Link to BLAST:NP_001153374.1

Chromosomal Locations for CCDS 51918.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 128609698 128609851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128618054 128618169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128618457 128618611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128619100 128619174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128622731 128622833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGCATCTCCTATGCACAATGGACACAGCAAGGGTCTACTTTGGTTTAAAGCCACCCAGGACTCCAGGGG
CTTGGCATGAGTCACCCCCATCTCTTCCCCCAGTGCGAGTCCTAATACAAAAACCATCAATAGAAAAATG
CTATGTGCTTATTCAAGAGAACCTGAATAAAACAACAGATTGTTCAGCTAAGCTAGAGTGCCCACAAGAC
TGGCTTTCACACCGAGATAAGTGCTTTCACGTTTCTCAAGTTTCCAACACTTGGGAGGAAGGTCTAGTTG
ATTGTGATGGAAAAGGAGCCACTTTGATGCTCATTCAAGACCAAGAAGAACTGAGATTCCTACTGGACTC
AATAAAGGAAAAATACAATTCATTTTGGATTGGACTAAGGTACACATTGCCAGACATGAACTGGAAGTGG
ATAAATGGATCGACTTTAAATTCTGATGTATTAAAAATCACTGGTGACACTGAAAATGACAGCTGTGCTG
CTATCTCAGGAGACAAAGTGACTTTTGAGAGCTGTAATTCAGACAACCGTTGGATCTGCCAAAAGGAACT
ATACCATGAAACCCTGAGCAACTATGTGGGTTATGGACACTGA

Translation (200 aa):
MHLLCTMDTARVYFGLKPPRTPGAWHESPPSLPPVRVLIQKPSIEKCYVLIQENLNKTTDCSAKLECPQD
WLSHRDKCFHVSQVSNTWEEGLVDCDGKGATLMLIQDQEELRFLLDSIKEKYNSFWIGLRYTLPDMNWKW
INGSTLNSDVLKITGDTENDSCAAISGDKVTFESCNSDNRWICQKELYHETLSNYVGYGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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