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Report for CCDS51922.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51922.1 Public Mus musculus 6 Clec12b 23 108 98 CCDS HistoryNCBI Gene:71183Re-query CCDS DB by CCDS ID:51922.1Re-query CCDS DB by GeneID:71183See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51922.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032261.8 ENSMUSP00000032261.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032261.8Link to Ensembl Protein Viewer:ENSMUSP00000032261.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032261Re-query CCDS DB by Protein ID:ENSMUSP00000032261
Original member Current member EBI ENSMUST00000112082.8 ENSMUSP00000107713.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112082.8Link to Ensembl Protein Viewer:ENSMUSP00000107713.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000112082Re-query CCDS DB by Protein ID:ENSMUSP00000107713
Original member Current member NCBI NM_001204223.1 NP_001191152.1 Accepted alive Link to Nucleotide Sequence:NM_001204223.1Link to Protein Sequence:NP_001191152.1Re-query CCDS DB by Nucleotide ID:NM_001204223Re-query CCDS DB by Protein ID:NP_001191152Link to BLAST:NP_001191152.1
Original member Current member NCBI NM_027709.2 NP_081985.1 Accepted alive Link to Nucleotide Sequence:NM_027709.2Link to Protein Sequence:NP_081985.1Re-query CCDS DB by Nucleotide ID:NM_027709Re-query CCDS DB by Protein ID:NP_081985Link to BLAST:NP_081985.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191152.1 275 Q149M0 275 97.4545% 0 7
NP_081985.1 275 Q149M0 275 97.4545% 0 7

Chromosomal Locations for CCDS 51922.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 129376195 129376345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129379523 129379638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129379913 129380067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129380488 129380703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129382380 129382478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129385400 129385490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGTCTGATGAAGTGACCTATGCGACACTGATGCTTCAGGACTCTGCAAGAGTGAGGGGGAATCGGGATG
GAAATAACCTAAGAAAAGAAGGACACCCAGCTCAATCCTCACTTTGGCGAGGCGCTGCCTTGAGTTTGAT
GACCCTCTGTTTGGTGCTGGTAACAGGACTGGTGACCTTGGCAACTATGTTTTTGCAGGTGTCTAATGAC
ATTAACTCTGATTCAGAGAAGTTGAGTCAGCTTCAGAAAAGCATCCATCCACAGCAGGACAATCTGTCTG
AATCACTGAACAGCTCCAGAAAGAGTCTGACGGAGGAGTCTCTCCAGTCCCAGATCTCTGCCCTACTGGA
GAGGCAGGAGCAGATGGCTACCAAACTCTGCAAGGAATTCCTCATCCACGCTTCTGACCATAAATGCAAC
CCTTGTCCCAAGACATGGCAATGGTATGGAAACAGTTGCTACTATTTCTCAATCAATGAAGAGAAATCCT
GGAGTGATAGCAGAAAGGACTGTATAGACAAGAATGCCACTCTGGTGAAGATTGACAGCACCGAAGAAAG
GGATCTCCTTCAGTCACAGCTGTCCCTCACATTTTCTTTCTTTTGGCTGGGATTGTCCTGGAACTCATCT
GGCAGAAACTGGCTGTGGGAGGATGGTTCATTCCCCCCTCCAACCCTGCTTAGTGACAAGGAGCTTGCGA
GTTTCAATGGATCCAGAGAGTGTGCTTATTTTGAAAGAGGGAATATTTACACTTCTCGCTGTCGTGCTGA
AATCCCTTGGATTTGTGAGAAGAGAGCCTCCCTGGTGAAGATTGAAGATTTGGATTAA

Translation (275 aa):
MSDEVTYATLMLQDSARVRGNRDGNNLRKEGHPAQSSLWRGAALSLMTLCLVLVTGLVTLATMFLQVSND
INSDSEKLSQLQKSIHPQQDNLSESLNSSRKSLTEESLQSQISALLERQEQMATKLCKEFLIHASDHKCN
PCPKTWQWYGNSCYYFSINEEKSWSDSRKDCIDKNATLVKIDSTEERDLLQSQLSLTFSFFWLGLSWNSS
GRNWLWEDGSFPPPTLLSDKELASFNGSRECAYFERGNIYTSRCRAEIPWICEKRASLVKIEDLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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