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Report for CCDS51939.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51939.1 Public Mus musculus 6 Eif4a3l1 23 108 98 CCDS HistoryNCBI Gene:668137Re-query CCDS DB by CCDS ID:51939.1Re-query CCDS DB by GeneID:668137See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51939.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077886.6 ENSMUSP00000133154.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077886.6Link to Ensembl Protein Viewer:ENSMUSP00000133154.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000077886Re-query CCDS DB by Protein ID:ENSMUSP00000133154
Original member Current member EBI ENSMUST00000204530.1 ENSMUSP00000144809.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204530.1Link to Ensembl Protein Viewer:ENSMUSP00000144809.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204530Re-query CCDS DB by Protein ID:ENSMUSP00000144809
Original member Current member NCBI NM_001142734.1 NP_001136206.1 Accepted alive Link to Nucleotide Sequence:NM_001142734.1Link to Protein Sequence:NP_001136206.1Re-query CCDS DB by Nucleotide ID:NM_001142734Re-query CCDS DB by Protein ID:NP_001136206Link to BLAST:NP_001136206.1

Chromosomal Locations for CCDS 51939.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 136328543 136329778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGGCGACCACGACCAGGATGGCGACGTCTGGCTCGGCGCGGAAGCGGCTGCTCAAAGAGGACGGCATGA
CCAAAGTGGAGTTCGAGACCAGCGAGGAGGTGGACGCGACCCCCACGTTCGACACCATGGGCCTGCGAGA
GGACCTGCTGCGCGGCATCTACGCCTACGGTTTTGAAAAACCTTCAGCGATCCAGCAGCGTGCTATCAAG
CAGATAATGAAAGGGAGAGATGTCATCGCACAGTCTCAGTCTGGCACAGGCAAGACGGCCACCTTCAGTA
TCTCAGTGCTCCAGTGCTTGGATATCCAGGTTCGAGAAACCCAAGCTTTGATCCTGGCTCCAACCAGAGA
GTTAGCGGTGCAGATTCAGAAGGGTCTGCTCGCTCTGGGAGATTACATGAACGTGCAGTGCCATGCCTGC
GTTGGGGGCACCAATGTCGGGGAGGACATCCGGAAGCTGGACTACGGGCAGCATGTGGTGGCAGGCACGC
CGGGACGCGTCTTTGATATGATCCGCCGGAGAAGTTTAACGACACGGGCTATCAAGATGCTGGTTTTGGA
TGAGGCTGATGAGATGTTGAACAGAGGTTTCAAGGAGCAGATCTATGATGTGTACAGGTATTTGCCACCA
GCCACACAGGTCGTTCTCGTCAGTGCCACACTGCCTCATGAGATCCTGGAGATGACCAACAAGTTCATGA
CCCACCCCATCCGCATCCTGGTGAAGCGTGATGAGTTGACTCTGGAAGGCATCAAACAGTTCTTTGTGGC
CGTGGAAAGAGAGGAATGGAAGTTTGATACTCTGTGTGATCTCTACGACACGCTGACCATCACCCAGGCC
GTCATCTTCTGCATCACCAAGAGGAAGGTTGACTGGCTGACAGAGAAAATGAGAGAAGCCAATTTCACTG
TGTCGTCCATGCATGGAGATATGCCCCAGAAAGAACGAGAGTCTATCATGAAGGAGTTCCGGTCAGGTGC
CAGCCGGGTGCTCATCTCCACAGATGTCTGGGCTCGAGGCCTGGATGTCCCTCAGGTGTCCCTCATCATT
AACTATGACCTGCCCAACAACAGAGAACTGTACATTCACAGAATTGGGAGATCGGGTCGGTATGGACGAA
AAGGTGTGGCCATCAATTTTGTGAAGAATGATGACATCCGGATTCTCAGGGACATCGAGCAGTACTACTC
CACCCAGATAGACGAGATGCCCATGAACCTGGCTGACCTCATCTGA

Translation (411 aa):
MATTTRMATSGSARKRLLKEDGMTKVEFETSEEVDATPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIK
QIMKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHAC
VGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLTTRAIKMLVLDEADEMLNRGFKEQIYDVYRYLPP
ATQVVLVSATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQA
VIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII
NYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNLADLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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