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Report for CCDS51955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51955.1 Public Mus musculus 6 Smco2 23 108 98 CCDS HistoryNCBI Gene:69371Re-query CCDS DB by CCDS ID:51955.1Re-query CCDS DB by GeneID:69371See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51955.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032433.8 ENSMUSP00000032433.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032433.8Link to Ensembl Protein Viewer:ENSMUSP00000032433.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000032433Re-query CCDS DB by Protein ID:ENSMUSP00000032433
Original member Current member NCBI NM_027059.1 NP_081335.1 Accepted alive Link to Nucleotide Sequence:NM_027059.1Link to Protein Sequence:NP_081335.1Re-query CCDS DB by Nucleotide ID:NM_027059Re-query CCDS DB by Protein ID:NP_081335Link to BLAST:NP_081335.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081335.1 347 Q9DA21 347 100% 0 0

Chromosomal Locations for CCDS 51955.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 146852599 146852693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146856045 146856150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146858849 146858976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146859914 146860063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146861676 146861751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146864058 146864114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146866737 146866793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146868089 146868264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146871147 146871345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGATGTCTCTGCAGTTGGGGACAGCTGGGAAGGAACGTCAGCTGGCTGAGAAGAGCCGTGATCTCCAAA
ATGTCAGCATGACCGAAGGTTCGGAGGAAGTTTCGGAAATGGACCACATCTCAGACAGACCAGATGAAAA
AGACAAACCTTCTGAAAACCTACAAACCGATTCCCTTTATAAGATGGACACTGAAAAATGGGATGGGTTG
GAGCAGGAGTCCGAGCACAGCCAGGACCCACCAAGCAAACCCGATGAGCAAGAAGTGACTCTAGTTTGCG
AGGGCCCTCAAGTGTCTCAGCTGTCACCGTCTACGGATGAGAGCACCCCGATCCCAGAGAGCTTGACCCA
CAAGCTGAACTACTGGCATGCAAAGATGGGTCTCCAAATGAAAGAACTCGGAGCCGACCACGGTGACTGG
TTGGAGAGAATCAACAACATTATACAAAATATAAATAATACAGAAAGCACGGTGAAGAGCTTGCTAACCG
AGGTTATATCCCTGGAAAACCAGTCTAAAAATCTGGAGGACTCTGATCAGGAGGCAGACATTGAGGAGAA
GATCACAGAAATTAGAAGGCAATTAAAGGAAGTGAACATCAAGTTGACTCAGGTCGATGCTTGCGAAGAA
GCCCGTGAATTGAAGGAGAAGCTTGTTGAACAGATAGAGAGCTTCCATAAGGAAATGAATGTCTTGAACA
GTAAGCTGGAGATGTACTACACGCAAGGATCGGATGCGGACTCCCATAACTCTGAAGACGTGGACACGGA
GCAAGAAGAGCCCCTGGTTCCCGAGGCTTCTCCGAGCCTGTCAGCATCACCCACTCCCCCCTGCAGTGCC
GTGTGGAAGAACGCACTGAAGCTGTTCGTCATAGTCTACGTGGTCACCATCACTGGACTGTCGTGCTACA
TACTGTTTGTGGACGCCACGTTTCTCTTCGAAAGGGTGCTGCCCAGCGTGCTGGGGCACCGCACCATGTG
GGATCTTCGGGAGATGATGGCGCCTTTCTTGAATTTAGAAGCAGAAGACTTGTTACCGTCCTAA

Translation (347 aa):
MMSLQLGTAGKERQLAEKSRDLQNVSMTEGSEEVSEMDHISDRPDEKDKPSENLQTDSLYKMDTEKWDGL
EQESEHSQDPPSKPDEQEVTLVCEGPQVSQLSPSTDESTPIPESLTHKLNYWHAKMGLQMKELGADHGDW
LERINNIIQNINNTESTVKSLLTEVISLENQSKNLEDSDQEADIEEKITEIRRQLKEVNIKLTQVDACEE
ARELKEKLVEQIESFHKEMNVLNSKLEMYYTQGSDADSHNSEDVDTEQEEPLVPEASPSLSASPTPPCSA
VWKNALKLFVIVYVVTITGLSCYILFVDATFLFERVLPSVLGHRTMWDLREMMAPFLNLEAEDLLPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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