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Report for CCDS51970.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51970.1 Public Mus musculus 7 Ttyh1 23 108 98 CCDS HistoryNCBI Gene:57776Re-query CCDS DB by CCDS ID:51970.1Re-query CCDS DB by GeneID:57776See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51970.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079415.11 ENSMUSP00000078384.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079415.11Link to Ensembl Protein Viewer:ENSMUSP00000078384.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000079415Re-query CCDS DB by Protein ID:ENSMUSP00000078384
Original member Current member NCBI NM_001001454.4 NP_001001454.2 Accepted alive Link to Nucleotide Sequence:NM_001001454.4Link to Protein Sequence:NP_001001454.2Re-query CCDS DB by Nucleotide ID:NM_001001454Re-query CCDS DB by Protein ID:NP_001001454Link to BLAST:NP_001001454.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001454.2 460 Q9D3A9-4 460 100% 0 0

Chromosomal Locations for CCDS 51970.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 4119655 4119780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4122477 4122655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4124620 4124731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4125523 4125743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4128170 4128265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4129301 4129373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4129658 4129733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4130581 4130636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4130797 4130889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4131291 4131383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4133075 4133217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4133663 4133738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4133866 4133904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGGGGGCACCCCCGGGCTACCGACCCTCTGCCTGGGTGCATCTCCTCCACCAGCTGCCCCGCGCCGACT
TCCAGCTCCGCCCGGTGCCCAGCGGCTTTGCTCCCCGCGACCAAGAGTACCAGCAGGCCCTGCTGCTGGT
GGCAGCCTTGGCTGGGCTTGGTTTAGGCCTGAGCCTCATCTTCATCGCTGTCTACCTCATCCGCTTCTGC
TGCTGCAGGCCTCCAGAACCCCATGGGGCCAAGAGTCCCCCACCCGGAGGAGGTTGCGTCACCTGGAGCT
GCATTGCTGCCCTTCTCGTGGGCTGTGCCGGCATTGGCATTGGTTTCTATGGTAACAGCGAGACCAGCGA
TGGGGTGTCCCAGCTCAGCTCAGCACTGCTGCACGCCAACCACACGCTCAGCACCATCGATGACGTGGTG
CTGGAAACGGTGGAGAGGCTGGGTGAGGCAGTGAAGACGGAGCTGACCACCCTGGAGGAAGTGCTGTCAG
TCCGCATGGAGCTGGTGGCTGCCACCAGGGGAGCCCGAAGGCAGGCTGAAGCTGCTGCTCAGTACCTGCA
AGGACTGGCCTTCTGGCAAGGAGTGTCCCTGAGCCCCGTACAGGTGGCTGAAGATGTGACTTTCGTGGAG
GAGTACAGGTGGCTGGCCTATGTCCTCCTGCTGCTCTTGGTGCTTCTGGTTTGTCTCTTCACCCTCCTGG
GCCTGGCAAAGCAGAGCAAATGGCTGGTGGTTGTGATGACTGCCATGAGTCTCCTGGTGCTTGTCCTGAG
CTGGGGTTCTATGGGCCTAGAGGCTGCCACAGCTGTGGGCCTCAGTGACTTCTGCTCCAACCCAGACACC
TATGTGCTGAACCTGACCCAGGAGGAGACAGGGCTCAGCTCAGACATCCTCAGCTATTATTTCCTGTGCA
ACCAGGCGGTCTCCAACCCCTTCCAACAGAGGCTGACGCTGTCCCAGCGTGCTCTAGCCAGCATCCACTC
TCAGCTGCAGGGCCTGGAGCGGGAAGCTATCCCTCAATTTTCTGCTGCACAGAAGCCCTTGTTATCCTTG
GAGGAGACACTGAATGTGACAGAAAGAAGCTTCCACCAGTTGGTGGCGCTGCTGCACTGCCGCAGTCTGC
ACAAGGACTATGGCTCAGCACTCCGAGGCCTGTGTGAAGATGCCCTAGAGGGCCTACTGTTCCTGATGCT
CTTTTCTCTCCTGTCTGCGGGGGCCCTAGCCACCACTCTGTGCAGCCTGCCCCGCGCCTGGGCCCTCTTC
CCACCCAGGAATCCAAACGCTTTGTGCAGTGGCAGTCTTCCATCTGAGCCTCCCCTCCAGTCTGGAGCCT
GCCTCTCCTCTATGCTCCTTTCCTGGCTGCTGGAGAAGGCCCCACTAACCTGA

Translation (460 aa):
MGAPPGYRPSAWVHLLHQLPRADFQLRPVPSGFAPRDQEYQQALLLVAALAGLGLGLSLIFIAVYLIRFC
CCRPPEPHGAKSPPPGGGCVTWSCIAALLVGCAGIGIGFYGNSETSDGVSQLSSALLHANHTLSTIDDVV
LETVERLGEAVKTELTTLEEVLSVRMELVAATRGARRQAEAAAQYLQGLAFWQGVSLSPVQVAEDVTFVE
EYRWLAYVLLLLLVLLVCLFTLLGLAKQSKWLVVVMTAMSLLVLVLSWGSMGLEAATAVGLSDFCSNPDT
YVLNLTQEETGLSSDILSYYFLCNQAVSNPFQQRLTLSQRALASIHSQLQGLEREAIPQFSAAQKPLLSL
EETLNVTERSFHQLVALLHCRSLHKDYGSALRGLCEDALEGLLFLMLFSLLSAGALATTLCSLPRAWALF
PPRNPNALCSGSLPSEPPLQSGACLSSMLLSWLLEKAPLT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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