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Report for CCDS52022.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52022.1 Public Mus musculus 7 Zfp446 23 108 98 CCDS HistoryNCBI Gene:269870Re-query CCDS DB by CCDS ID:52022.1Re-query CCDS DB by GeneID:269870See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52022.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108535.7 ENSMUSP00000104175.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108535.7Link to Ensembl Protein Viewer:ENSMUSP00000104175.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108535Re-query CCDS DB by Protein ID:ENSMUSP00000104175
Original member NCBI NM_001168562.1 NP_001162034.1 Updated not alive Link to Nucleotide Sequence:NM_001168562.1Link to Protein Sequence:NP_001162034.1Re-query CCDS DB by Nucleotide ID:NM_001168562Re-query CCDS DB by Protein ID:NP_001162034
Current member NCBI NM_001168562.2 NP_001162034.1 Accepted alive Link to Nucleotide Sequence:NM_001168562.2Link to Protein Sequence:NP_001162034.1Re-query CCDS DB by Nucleotide ID:NM_001168562Re-query CCDS DB by Protein ID:NP_001162034Link to BLAST:NP_001162034.1

Chromosomal Locations for CCDS 52022.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 12979037 12979378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12979451 12979646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12979885 12979979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12981846 12981983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (771 nt):
ATGCCATCTCCTCGGGGTACCCCACACCTATCCCTCAGAGACTCCAGGACCACCCTTGAGGAGCCTGAGG
CTGCACGACTCCGTTTCCGGGGTTTCTGCTATGAGGAGGTTGAGGGACCCCGAGAGGCACTGGCCCAGCT
TCGAGAGTTGTGTCACCAGTGGCTACAGCCTGAGTCATCCTCCAAAGAACACATAATAGAGTTGCTGATT
TTGGAACAGTTCCTGGGTGTGTTGCCCCCTGAGATCCAGGCCTGGGTTCGAGGGCAGCGACCAGGAAGCC
CCGAGGAGGCCGCAGTTCTTGTTGAGGGGCTGCAGCATGATCCTGGGCAGCTGCTGGGCTGGATCACAGC
CCACATCCTGAAGCCAAAGATGCTTCCTCTAGTCCAGAAGGAGTCCTCAGGGAGTCACCACATCTCAGCA
GCAACGGAGTCCTCCAAGGCAGGCCTTGCGGAGGCACCGCTGAAGGCCGGGATAGATCGATCTACCCAGA
TCAGTTGCAGTGTGAAGGAGGAAGTCAGTGCTGATGGGCAGGAGATGGTATCTCCAAGTGCCCTCCTTTC
AACCCAGGATTCCGAGGGACATCTTGAACATCAGGAAACGGTCTCCATATCCTTCCAAACAGGAAGGATC
CAGGAGTGGGGCCTGTTGGACTCATCACAAAAAGAGCTGTGCTGGGGTGTGATGCCGGAGAAGTACGACA
CAGTGGTGTCCCAGGGTGAGGATCAATGGCCTTCCCTGTCCCATCCTCCACACACCTCCCACGTGTACTA
G

Translation (256 aa):
MPSPRGTPHLSLRDSRTTLEEPEAARLRFRGFCYEEVEGPREALAQLRELCHQWLQPESSSKEHIIELLI
LEQFLGVLPPEIQAWVRGQRPGSPEEAAVLVEGLQHDPGQLLGWITAHILKPKMLPLVQKESSGSHHISA
ATESSKAGLAEAPLKAGIDRSTQISCSVKEEVSADGQEMVSPSALLSTQDSEGHLEHQETVSISFQTGRI
QEWGLLDSSQKELCWGVMPEKYDTVVSQGEDQWPSLSHPPHTSHVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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