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Report for CCDS52052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52052.1 Public Mus musculus 7 Rsph6a 23 108 98 CCDS HistoryNCBI Gene:83434Re-query CCDS DB by CCDS ID:52052.1Re-query CCDS DB by GeneID:83434See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52052.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076887.5 ENSMUSP00000076153.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076887.5Link to Ensembl Protein Viewer:ENSMUSP00000076153.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000076887Re-query CCDS DB by Protein ID:ENSMUSP00000076153
Original member NCBI NM_001159671.1 NP_001153143.1 Updated not alive Link to Nucleotide Sequence:NM_001159671.1Link to Protein Sequence:NP_001153143.1Re-query CCDS DB by Nucleotide ID:NM_001159671Re-query CCDS DB by Protein ID:NP_001153143
Current member NCBI NM_001159671.2 NP_001153143.1 Accepted alive Link to Nucleotide Sequence:NM_001159671.2Link to Protein Sequence:NP_001153143.1Re-query CCDS DB by Nucleotide ID:NM_001159671Re-query CCDS DB by Protein ID:NP_001153143Link to BLAST:NP_001153143.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153143.1 453 Q8CDR2-2 453 100% 0 0

Chromosomal Locations for CCDS 52052.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19054745 19055373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19057537 19057768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19067089 19067233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19068034 19068151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19074038 19074275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGGGGGAACCACCGCCCAATCCTGACCCCTCTCAAACCCGGAGGGCTTCCCAAGGCTCAGAAAGGGCAC
GGAGTCAAGAGTACTCTCAGCCTCTGTTAACCATCCCAGAGGATGGGTTGAACCGACCACCTCCGCAGCG
GGGCAGTCGGAGCAGTCAGGGCAGTCAGGACCTGCAGGGAACTGGTCTACCCCACTGGCCACAGAGGTCC
AGCCTGGTCCCAGATGTTCAAGGTGATGAAGGCACCGAGTACCACCAGTCCATGCCCTTAGGCTACACGC
CAGGCTTTCCCATGGAGTTCTCGCAACAGGGTTACCTGGATGATAGCAGGATGATGGAGCAGTTCCCACA
GGGCCAGGACCTCTTAGAACAACTGGAGTCTACCTACCAAGGCTCGGCTTCTGGAATCCTGGGCCAGCTC
AACTTGTATCCAAGAGAGGATGAGATATTCAGCCAGGACACACAGCACGGACCCTACCTGAGAGACGACC
CCTCCCTCCACCTGAGGCCCTCTGACCTGGGCTTCATGCCCATTGTTGGAGAGGTACCTGACCCCGAGCC
TCGTGAGCTGGCAATACAGAACGCCAAGGCCTACCTGCTGCGGACCAGCATGAGCTGCAACCTCAGCCTG
TATGAGCACCTGGTGAACCTGCTGACCAAGATCCTGAACCAGCGCCCTGAGGACCCCTTGTCCATCCTGG
AGTCTCTGAACCGCACCATGCAGTGGGAATGGTTTCACCCCAAGCTGGACACGCTGCGGGACGACCCCGA
GATGCAGCCCACCTACGAGATGGCCGAAAAGCAAAAGGCTCTGTTTATCAGGGGTGGAGGAGAAGGCGAA
CAGGAAATGGAAGAGGAGGTGGGGCGCTGTACATGGGTGAACCCACTGCAGAAAACAGAGGAGGAAGAAG
AGCTAGGGGAGGAGGAAGAGAAGGCAGACGAGGCAATGGAGGAGGTGGAGCAGGAGGTCGGTCCTCCGCT
TCTGACTCCGCTCTCAGAAGATGCAGAAATCATGCACCTGTCGCCCTGGACCACCCGCCTCTCCTGCAGC
CTCAGCCCTCAGTACTCGGTGGCCATCGTGCGCTCCAACCTCTGGCCAGGGGCCTATGCCTACGCCACTG
GCAAGAAGTTTGAGAACATATACATTGGCTGGGGTCACAAGTATAGCCCCGAGAACTTCAACCCAATGCT
GCCAGCTCTGATTCAGCAAGAGTACCCCAGCGGCCCCGAAATCACGGAGATGAGTGACCCCACAGTGGAG
GAGGAGCAGGCCCTGAAGGCTGCTCAGGAGCAGGCCCTGGCAGCCGCTGAGGAAGAGGAGGAAGATGAGG
AAGAGGAGGAGGATGAAGACCTGGAGGACTGA

Translation (453 aa):
MGEPPPNPDPSQTRRASQGSERARSQEYSQPLLTIPEDGLNRPPPQRGSRSSQGSQDLQGTGLPHWPQRS
SLVPDVQGDEGTEYHQSMPLGYTPGFPMEFSQQGYLDDSRMMEQFPQGQDLLEQLESTYQGSASGILGQL
NLYPREDEIFSQDTQHGPYLRDDPSLHLRPSDLGFMPIVGEVPDPEPRELAIQNAKAYLLRTSMSCNLSL
YEHLVNLLTKILNQRPEDPLSILESLNRTMQWEWFHPKLDTLRDDPEMQPTYEMAEKQKALFIRGGGEGE
QEMEEEVGRCTWVNPLQKTEEEEELGEEEEKADEAMEEVEQEVGPPLLTPLSEDAEIMHLSPWTTRLSCS
LSPQYSVAIVRSNLWPGAYAYATGKKFENIYIGWGHKYSPENFNPMLPALIQQEYPSGPEITEMSDPTVE
EEQALKAAQEQALAAAEEEEEDEEEEEDEDLED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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