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Report for CCDS52056.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52056.1 Public Mus musculus 7 Vasp 23 108 98 CCDS HistoryNCBI Gene:22323Re-query CCDS DB by CCDS ID:52056.1Re-query CCDS DB by GeneID:22323See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52056.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032561.8 ENSMUSP00000032561.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032561.8Link to Ensembl Protein Viewer:ENSMUSP00000032561.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000032561Re-query CCDS DB by Protein ID:ENSMUSP00000032561
Original member Current member NCBI NM_009499.3 NP_033525.2 Accepted alive Link to Nucleotide Sequence:NM_009499.3Link to Protein Sequence:NP_033525.2Re-query CCDS DB by Nucleotide ID:NM_009499Re-query CCDS DB by Protein ID:NP_033525Link to BLAST:NP_033525.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033525.2 375 P70460 375 100% 0 0

Chromosomal Locations for CCDS 52056.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19257717 19257754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19257862 19257919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19258803 19258893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19258974 19259019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19259232 19259265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19259416 19259467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19260581 19260681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19260824 19261065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19261176 19261213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19261975 19262059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19264405 19264570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19264654 19264825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19271514 19271518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1128 nt):
ATGAGCGAGACGGTCATCTGTTCCAGCCGGGCTACTGTGATGCTTTATGATGACAGCAACAAGCGATGGC
TCCCTGCTGGCACTGGTCCCCAGGCCTTCAGCCGCGTCCAGATCTACCACAACCCCACTGCTAACTCCTT
CCGAGTTGTTGGCCGCAAGATGCAGCCGGATCAGCAGGTGGTTATCAACTGTGCCATCATTCGGGGTGTC
AAGTACAATCAGGCCACTCCCATCTTCCATCAGTGGCGAGATGCCCGCCAGGTCTGGGGCCTCAACTTCG
GCAGCAAGGAGGACGCCATACAGTTTGCAACAGGCATGGCCAACGCCCTAGAGGCCTTGGAAGGAGGTGG
GCCTCCCCCAGCCCCAGCACCCCCTGCCTGGTCTGCCCAGAATGGTCCCTCCCCAGAGGAGCTGGAACAA
CAGAAAAGGCAGCCGGAGCATATGGAGCGCCGGGTCTCCAATGCAGGAGGCCCACCTGCTCCCCCAGCTG
GGGGCCCTCCTCCACCTCCAGGACCTCCCCCTCCTCCAGGTCCCCCCCCACCCCCAGGTCTGCCCTCCTC
AGGGGTATCTGGGGCAGGTCATGGAGCAGGGGCAGCCCCACCCCCTGCACCCCCACTCCCTACAGCACAG
GGCCCCAATAGTGGGGGTTCCGGGGCCCCAGGCCTGGCTGCTGCCATTGCTGGAGCCAAACTCAGGAAAG
TGAGCAAGCAGGAGGAGGCCTCTGGGGGGCCCCTGGCCCCCAAAGCTGAGAACAGTCGAAGCACTGGTGG
GGGGCTTATGGAAGAGATGAACGCCATGCTGGCCCGGAGAAGAAAAGCCACACAGGTTGGGGAGAAGCCC
CCCAAAGACGAGTCAGCCAGTGAGGAGTCAGAGGCCCGACTCCCTGCCCAGAGTGAACCTGTGAGAAGAC
CCTGGGAGAAGAACAGCACAACCTTGCCAAGGATGAAGTCGTCCTCTTCTGTGACTACCTCCGAGGCCCA
CCCCTCGACGCCCTGCTCCAGTGATGACTCCGACTTGGAGAGGGTGAAGCAGGAGCTTCTGGAAGAGGTG
CGGAAGGAGCTACAGAAAATGAAAGAGGAAATCATCGAAGTCTTTGTCCAGGAGCTGAGGAAGCGGGGTT
CTCCTTGA

Translation (375 aa):
MSETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVVINCAIIRGV
KYNQATPIFHQWRDARQVWGLNFGSKEDAIQFATGMANALEALEGGGPPPAPAPPAWSAQNGPSPEELEQ
QKRQPEHMERRVSNAGGPPAPPAGGPPPPPGPPPPPGPPPPPGLPSSGVSGAGHGAGAAPPPAPPLPTAQ
GPNSGGSGAPGLAAAIAGAKLRKVSKQEEASGGPLAPKAENSRSTGGGLMEEMNAMLARRRKATQVGEKP
PKDESASEESEARLPAQSEPVRRPWEKNSTTLPRMKSSSSVTTSEAHPSTPCSSDDSDLERVKQELLEEV
RKELQKMKEEIIEVFVQELRKRGSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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