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Report for CCDS52189.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52189.1 Public Mus musculus 7 Gramd1a 23 108 98 CCDS HistoryNCBI Gene:52857Re-query CCDS DB by CCDS ID:52189.1Re-query CCDS DB by GeneID:52857See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52189.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001280.13 ENSMUSP00000001280.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001280.13Link to Ensembl Protein Viewer:ENSMUSP00000001280.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000001280Re-query CCDS DB by Protein ID:ENSMUSP00000001280
Original member Current member NCBI NM_027898.4 NP_082174.3 Accepted alive Link to Nucleotide Sequence:NM_027898.4Link to Protein Sequence:NP_082174.3Re-query CCDS DB by Nucleotide ID:NM_027898Re-query CCDS DB by Protein ID:NP_082174Link to BLAST:NP_082174.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082174.3 722 Q8VEF1-1 722 100% 0 0

Chromosomal Locations for CCDS 52189.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 31130492 31130584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31132541 31132661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31132758 31132865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31133991 31134078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31134158 31134331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31134414 31134517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31135597 31135739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31135823 31135941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31138114 31138257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31138752 31138950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31139397 31139547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31139757 31139869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31141130 31141210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31142368 31142463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31142551 31142654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31142804 31142888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31143547 31143567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31143657 31143873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31150896 31150903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2169 nt):
ATGTTCGACACCACGCCCCACTCTGGCCGGAGCTCCCCCAGCAGCTCCCCGTCTCTTCGTAAGCGGCTTC
AGCTCTTGCCCCCAATCCGGCCCCCTCCGGCTTCTGAGCCAGAACCAGGCACCATGGTGGAGAAGGGGTC
TGACAGCTCCTCTGAGAAAAGTGGCGTGTCGGGGACACTCAGCACCCAGAGCCTGGGCAGCCGGAACTTC
ATCCGCAACAGTAAGAAGATGCAGAGCTGGTACAGTATGCTGTGTCCCACATACAAACAACGCAACGAGG
ACTTCCGGAAACTGTTCAGCAAACTTCCTGAAGCAGAGCGCCTCATCGTGGATTACTCCTGCGCCCTGCA
GAGGGAGATCCTCCTCCAGGGCCGCCTCTACCTCTCTGAGAACTGGATCTGTTTCTACAGCAACATCTTC
CGCTGGGAGACCACAATTTCCATCCAGTTGAAGGAAGTGACCTGTCTGAAGAAGGAGAAGACGGCTAAGC
TCATCCCCAATGCCATTCAGATCTGTACTGAGAGTGAGAAGCATTTCTTCACTTCCTTCGGGGCCCGAGA
CCGCTGCTTCCTCCTCATCTTCCGTCTCTGGCAGAACGCGCTGCTTGAAAAGACACTGAGTCCTCGAGAG
CTTTGGCACCTGGTCCATCAGTGCTATGGCTCGGAGCTGGGCCTCACCAGTGAAGACGAAGACTATGTCT
GCCCCTTGCAACTGAATGGTCTTGGGAGTCCCAAAGAGGTGGGAGACGTGATCGCACTCAGCGACATCAG
TCCCTCGGGGGCGGCTGACCACAGCCAGGAGCCAAGCCCTGTGGGTTCAAGACGTGGCCGGGTCACCCCA
AACCTCTCTCGAGCCAGCAGTGATGCAGACCATGGGGCCGAGGAGGACAAGGAAGAACAGACGGACGGTC
TGGATGCCTCCTCCAGCCAGACAGTGACCCCAGTAGCAGAACCGCTGAGTTCTGAGCCGACACCACCAGA
TGGGCCCACTTCCTCCTTGGGTCCCTTGGATCTGCTGTCTAGAGAGGAACTATTGACAGACACGAGTAAC
TCGTCCTCATCCACTGGGGAGGAAGGTGACCTGGCTGCACTGCTGCCTGACCTCTCCGGCCGGCTCCTCA
TCAATTCTGTCTTCCACATGGGTGCTGAGCGTCTGCAGCAGATGCTCTTCTCGGACTCTCCGTTCCTGCA
AGGCTTCCTGCAGCAGCGCAAGTTCACAGATGTGACCTTGAGCCCTTGGAGCAGTGACAGCAAGTGCCAC
CAGCGCAGAGTCCTGACCTACACCATCCCCATTAGCAACCAGCTAGGCCCCAAGAGCGCCTCTGTGGTGG
AGACACAGACGCTGTTCCGGCGCGGCCCACAGGCGGGCGGGTGCGTGGTGGACTCTGAGGTGCTCACCCA
GGGCATCCCGTACCAGGACTACTTCTACACTGCCCACCGATACTGTATCCTGGGTCTGGCCCGGAACAAG
GCCCGGCTTCGTGTATCCTCAGAGATCCGCTACCGAAAGCAACCGTGGAGCCTCGTAAAGTCGCTCATTG
AGAAGAACTCGTGGAGCGGCATCGAAGATTATTTCCACCACCTGGATCGAGAACTCGCCAAGGCAGAAAA
GCTGTCCCTGGAGGAAGGAGGGAAAGATACACGTGGACTACTGTCAGGCCTGCGGAGGAGGAAGCGGCCC
CTGAGCTGGAGGGGGCACAGAGATGGGCCTCAGCACCCAGACCCAGACCCCTGCACCCAGACCAGCATGC
ACACCTCAGGTTCCCTCAGCTCTCGCTTCTCGGAACCATCTGTGGATCAGGGCCCCGGGGCAGGCATCCC
CAGCGCCCTGGTTCTCATCAGCATTGTCCTCATCGTTCTCATCGCCCTCAATGCCCTCCTCTTCTACCGT
CTCTGGTCTCTGGAGAGAACAGCCCATACCTTTGAGTCCTGGCACAGCCTGGCACTGGCCAAGGGCAAGT
TCCCCCAGACAGCCACGGAGTGGGCGGAGATCTTGGCTCTGCAGAAGCACTTCCACAGCGTTGAGGTGCA
CAAGTGGAGGCAGATCCTTCGAGCATCCGTGGAGCTCCTGGATGAGATGAAGTTCTCCTTGGAGAAGCTA
CATCAAGGAATTACTGTCCCGGATCCTCCCCTGGACACTCAGCCACAGCCTGATGACAGTTTTCCCTGA

Translation (722 aa):
MFDTTPHSGRSSPSSSPSLRKRLQLLPPIRPPPASEPEPGTMVEKGSDSSSEKSGVSGTLSTQSLGSRNF
IRNSKKMQSWYSMLCPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYSNIF
RWETTISIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRE
LWHLVHQCYGSELGLTSEDEDYVCPLQLNGLGSPKEVGDVIALSDISPSGAADHSQEPSPVGSRRGRVTP
NLSRASSDADHGAEEDKEEQTDGLDASSSQTVTPVAEPLSSEPTPPDGPTSSLGPLDLLSREELLTDTSN
SSSSTGEEGDLAALLPDLSGRLLINSVFHMGAERLQQMLFSDSPFLQGFLQQRKFTDVTLSPWSSDSKCH
QRRVLTYTIPISNQLGPKSASVVETQTLFRRGPQAGGCVVDSEVLTQGIPYQDYFYTAHRYCILGLARNK
ARLRVSSEIRYRKQPWSLVKSLIEKNSWSGIEDYFHHLDRELAKAEKLSLEEGGKDTRGLLSGLRRRKRP
LSWRGHRDGPQHPDPDPCTQTSMHTSGSLSSRFSEPSVDQGPGAGIPSALVLISIVLIVLIALNALLFYR
LWSLERTAHTFESWHSLALAKGKFPQTATEWAEILALQKHFHSVEVHKWRQILRASVELLDEMKFSLEKL
HQGITVPDPPLDTQPQPDDSFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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