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Report for CCDS52478.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52478.1 Public Mus musculus 8 Cars2 23 108 98 CCDS HistoryNCBI Gene:71941Re-query CCDS DB by CCDS ID:52478.1Re-query CCDS DB by GeneID:71941See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52478.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049461.6 ENSMUSP00000046453.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049461.6Link to Ensembl Protein Viewer:ENSMUSP00000046453.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000049461Re-query CCDS DB by Protein ID:ENSMUSP00000046453
Original member Current member NCBI NM_024248.1 NP_077210.1 Accepted alive Link to Nucleotide Sequence:NM_024248.1Link to Protein Sequence:NP_077210.1Re-query CCDS DB by Nucleotide ID:NM_024248Re-query CCDS DB by Protein ID:NP_077210Link to BLAST:NP_077210.1

Chromosomal Locations for CCDS 52478.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 11514114 11514191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11514493 11514699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11516151 11516249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11517819 11517942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11518406 11518544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11518924 11518990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11526002 11526069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11529580 11529713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11530295 11530427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11537272 11537355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11541898 11542003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11542519 11542590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11547727 11547844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11550258 11550308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11550499 11550677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGCTGCGGGCGCGCGGGCCTGGGCCCGGCGCTCTGCTGCTCCGGGCCGCGCTGGGTCTCGGGCGGCGCG
GGCGGTCATGGCAACGGCCGCAAGGCCAGGACACCGGCGTGCAGGTGCATAACAGCCTCACTGGCAGGAA
GGAGCCGCTGATAGTGGCCCGCTCGGACGCAGTCTCCTGGTATAGCTGTGGACCGACTGTGTACGACCAT
GCACATCTTGGCCATGCTTGCTCCTATGTTAGATTTGACATTATCCGGAGGATCCTGACCAGAGTGTTTG
GATGCAATGTGGTCATGGCGATGAGCATTACCGACGTGGATGACAAAATAATCAAGAGAGCTAACGAGAT
GAACGTGACGCCCGCTTCTCTCGCCAGTCTTTTTGAGGAAGAATTTAAACAAGACATGGCAGCCCTGAAG
GTTCTGCCGCCAACTGTGTATTTGAGAGTCACTGAGAACATCCCTCAGATCATTGCTTTCATCGAGGGCA
TCATTGCTCACGGCCATGCATACTCGACAGCTACAGGCAGCGTCTACTTCGATCTGCACGCCCGAGGGGA
CAAGTATGGCAAGCTGGTCAACACGGTTCCCAGTGCCACTGCAGAGCCAGCAGGTGACTCTGACAAGCGG
CACAGCAGCGACTTCGCCCTGTGGAAGGCAGCCAAACCTCAGGAGGTGTTCTGGGCTTCGCCGTGGGGAG
ACGGACGGCCTGGATGGCACATCGAGTGCTCTACCATGGCCAGTGAGGTGTTCGGAAGCCACCTGGACAT
CCACACCGGCGGCATAGACTTGGCTTTCCCACATCACGAAAATGAAATCGCGCAGAGTGAAGTCTTCCAC
CAGTGTCAGCAGTGGGGAAATTACTTCCTACATTCTGGTCATTTGCATGTGAAAGGCACAGAAGAAAAGA
TGTCCAAATCCCTAAAAAACTATATCACCATTAAGGACTTCCTGAAGACCTTCTCCCCTGACGTCTTCCG
GCTTTTCTGCTTGCGTACCAACTATAGGTCAGCCATTGAATACAGTGACAGTACCTTGGTGGAAGCCAAG
CACCTCCTGCTGGGGCTGGCCTCTTTTGTGGAGGATGCACGAGCCTACGTAAAGGGGCAGCTGACCTGTG
GCCCTGTTGAGGAGGATGTGCTATGGGAGAGGCTGACTAGCACCAAGAAGGCGGTGAAAGCTGCTCTAGC
CAATGACTTTGACACACCGAGGGCAGTGAACACCATCCTGGACCTTGTGCACCATGCAAACAGACAGCTC
AGGGCGGTCTCCAAGGAAGCTAGTGGCCCAAGGAGTCCCACTGTGTTTGGGGCCATCATTTCCTACGTTG
AGCAGTTTTTCGAGACTGTTGGGATTTCTCTGGCAAATCGACAGTGTGTTTCAGGAGACAGCAGCACAGT
AACGTTGCGCTGTGTGGTAGATGAACTCGTGCGCTTCAGGCTGAAGGTCCGCCAGTATGCACTGGACACA
CCCGGGGCTGCTGGGGAGGCTCGGAAACGGCAGCTCCAGGAAAGGCAGCCCTTGCTGGAGGCATGTGACA
CACTCCGACAGGACCTCGTCACCCATGGCATCAATGTTAAGGACAGAGGCAGTGCAGCCTCCACATGGGA
ACTGCTGGATCCAAGGACAAGACACCAGAAACCTGGGGACCGAGGATGA

Translation (552 aa):
MLRARGPGPGALLLRAALGLGRRGRSWQRPQGQDTGVQVHNSLTGRKEPLIVARSDAVSWYSCGPTVYDH
AHLGHACSYVRFDIIRRILTRVFGCNVVMAMSITDVDDKIIKRANEMNVTPASLASLFEEEFKQDMAALK
VLPPTVYLRVTENIPQIIAFIEGIIAHGHAYSTATGSVYFDLHARGDKYGKLVNTVPSATAEPAGDSDKR
HSSDFALWKAAKPQEVFWASPWGDGRPGWHIECSTMASEVFGSHLDIHTGGIDLAFPHHENEIAQSEVFH
QCQQWGNYFLHSGHLHVKGTEEKMSKSLKNYITIKDFLKTFSPDVFRLFCLRTNYRSAIEYSDSTLVEAK
HLLLGLASFVEDARAYVKGQLTCGPVEEDVLWERLTSTKKAVKAALANDFDTPRAVNTILDLVHHANRQL
RAVSKEASGPRSPTVFGAIISYVEQFFETVGISLANRQCVSGDSSTVTLRCVVDELVRFRLKVRQYALDT
PGAAGEARKRQLQERQPLLEACDTLRQDLVTHGINVKDRGSAASTWELLDPRTRHQKPGDRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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