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Report for CCDS52480.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52480.1 Public Mus musculus 8 Arhgef7 23 108 98 CCDS HistoryNCBI Gene:54126Re-query CCDS DB by CCDS ID:52480.1Re-query CCDS DB by GeneID:54126See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52480.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110909.8 ENSMUSP00000106534.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110909.8Link to Ensembl Protein Viewer:ENSMUSP00000106534.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110909Re-query CCDS DB by Protein ID:ENSMUSP00000106534
Original member NCBI NM_001113517.1 NP_001106989.1 Updated not alive Link to Nucleotide Sequence:NM_001113517.1Link to Protein Sequence:NP_001106989.1Re-query CCDS DB by Nucleotide ID:NM_001113517Re-query CCDS DB by Protein ID:NP_001106989
Current member NCBI NM_001113517.2 NP_001106989.1 Accepted alive Link to Nucleotide Sequence:NM_001113517.2Link to Protein Sequence:NP_001106989.1Re-query CCDS DB by Nucleotide ID:NM_001113517Re-query CCDS DB by Protein ID:NP_001106989Link to BLAST:NP_001106989.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106989.1 782 Q9ES28-5 782 100% 0 0

Chromosomal Locations for CCDS 52480.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 11728252 11728416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11758431 11758517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11781155 11781239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11782525 11782655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11785713 11785914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11791456 11791544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11800460 11800554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11800773 11800868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11805201 11805323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11808716 11808854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11809517 11809576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11810251 11810397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11812597 11812683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11814943 11815021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11815161 11815300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11817660 11817884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11819638 11819731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11821960 11822049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11824505 11824719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2349 nt):
ATGAATTCTGCCGAGCAGACCGTTACGTGGCTCATCACCCTGGGCGTGCTGGAGTCGCCCAAGAAAACCA
TCTCGGACCCTGAGGTCTTCTTGCAGGCGTCGCTCAAGGACGGGGTGGTCCTATGCCGGCTGCTGGAGCG
CCTGCTGCCCGGGACCATCGAGAAAGTCTACCCGGAGCCGCGGAACGAGAGCGAGTGCCTGAGCAACATC
CGCGAGTTCCTGCGCGCCTGCGGGGCGTCCCTGCGCCTAGAGACTTTTGATGCAAATGATTTGTATCAGG
GGCAGAACTTTAACAAGGTCCTCAGCTCCTTGGTGACACTAAATAAAGTGACAGCAGACATTGGACTAGG
AAGTGATTCTGTGTGTGCTCGGCCTTCGTCCCATCGGATAAAGTCTTTTGATTCCCTGGGATCCCAGTCT
TCACACAGTAGGACTTCAAAATTGCTTCAGAGCCAGTACCGAAGCTTGGACATGACTGATAACACCAACA
GCCAACTGGTAGTACGAGCCAAGTTTAACTTCCAGCAGACCAATGAAGATGAACTCTCCTTCTCAAAGGG
TGATGTCATCCATGTCACACGAGTGGAGGAAGGAGGCTGGTGGGAGGGCACACACAATGGCAGGACCGGC
TGGTTCCCCAGCAACTACGTTCGAGAGATCAAGCCAAGTGAGAAGCCCGTGTCACCCAAATCAGGGACCT
TGAAGAGCCCTCCCAAAGGGTTCGATACGACTGCCATCAACAAGAGCTATTACAACGTGGTGCTACAGAA
CATCCTGGAAACAGAGCATGAGTATTCCAAGGAGCTGCAGTCTGTGCTGTCCACCTACCTGCGGCCACTG
CAGACCAGTGACAAGTTGAGTTCAGCAAACACTTCATATTTAATGGGAAATCTAGAGGAAATATCTTCCT
TCCAGCAAGTGCTTGTACAGTCCCTAGAAGAATGCACGAAGTCTCCTGAAGCCCAACAGAGAGTTGGTGG
CTGCTTCCTGAGCCTGATGCCGCAGATGAGGACCCTGTACCTCGCTTACTGTGCCAACCACCCATCTGCT
GTGAGCGTCCTCACAGAGCACAGTGAGGACCTAGGAGAGTTCATGGAAACAAAAGGTGCCAGCAGCCCTG
GGATCCTGGTGCTGACCACCGGCCTGAGCAAGCCCTTCATGCGCCTGGACAAGTACCCCACACTGCTAAA
GGAGCTGGAGAGACACATGGAGGATTATCATCCTGATAGACAAGATATTCAGAAGTCTATGACGGCCTTC
AAAAACCTTTCAGCTCAGTGTCAAGAAGTTCGCAAGAGGAAGGAGCTGGAGCTGCAGATCCTGACGGAGC
CCATCAGGAGCTGGGAGGGGGATGACATAAAGACCCTGGGCAGTGTCACATACATGTCCCAAGTCACCAT
TCAGTGTGCGGGAAGCGAGGAGAAGAATGAGAGATACCTCCTGCTCTTCCCAAACCTTCTGCTCATGTTG
TCTGCAAGTCCCAGGATGAGTGGTTTCATCTATCAGGGGAAGCTGCCAACAACAGGAATGACAATCACAA
AGCTTGAGGACAGTGAAAACCATAGGAATGCATTTGAGATATCAGGGAGCATGATCGAGCGGATTCTGGT
GTCCTGCACCAGCCAGCAGGACTTACACGAGTGGGTGGAACACCTGCAGAAGCAGACGAAGGTCACATCT
GTGAGCAACCCCACCATCAAACCCCACTCGGTGCCATCACACACACTTCCTTCCCATCCTCTCACTCCAT
CCAGCAAACACGCGGACAGCAAGCCCGTGGCACTGACGCCTGCGTACCACACACTCCCCCACCCCTCTCA
CCATGGCACCCCACACACCACCATCAGCTGGGGACCCCTGGAGCCTCCGAAGACCCCCAAGCCTTGGAGC
CTGAGTTGCCTGCGGCCTGCACCTCCCCTCCGGCCCTCAGCTGCTCTCTGCTACAAGGAGGATCTCAGTA
AGAGCCCCAAGACCATGAAAAAGCTGCTGCCGAAGCGCAAGCCCGAGCGGAAGCCTTCGGACGAGGAGTT
CGCTGTGCGCAAGAGCACAGCGGCGCTGGAAGAAGACGCTCAGATCCTGAAGGTTATCGAAGCTTATTGC
ACAAGTGCAAAGACGCGCCAGACCCTGAACTCAACATGGCAAGGCACTGACCTGATGCATAATCACGTCT
TGGCTGATGACGACCAATCAAGTCTAGACTCCTTGGGTCGTCGCAGTAGCCTTTCTCGTTTGGAGCCCTC
AGACCTCTCGGAAGACTCTGAGTATGACAGTATATGGACAGCCCATAGTTACAGAATGGGTTCTGCATCC
CGTAAGAGCTGCTGCTCATATATCTCTCACCAGAACTAA

Translation (782 aa):
MNSAEQTVTWLITLGVLESPKKTISDPEVFLQASLKDGVVLCRLLERLLPGTIEKVYPEPRNESECLSNI
REFLRACGASLRLETFDANDLYQGQNFNKVLSSLVTLNKVTADIGLGSDSVCARPSSHRIKSFDSLGSQS
SHSRTSKLLQSQYRSLDMTDNTNSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTG
WFPSNYVREIKPSEKPVSPKSGTLKSPPKGFDTTAINKSYYNVVLQNILETEHEYSKELQSVLSTYLRPL
QTSDKLSSANTSYLMGNLEEISSFQQVLVQSLEECTKSPEAQQRVGGCFLSLMPQMRTLYLAYCANHPSA
VSVLTEHSEDLGEFMETKGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHPDRQDIQKSMTAF
KNLSAQCQEVRKRKELELQILTEPIRSWEGDDIKTLGSVTYMSQVTIQCAGSEEKNERYLLLFPNLLLML
SASPRMSGFIYQGKLPTTGMTITKLEDSENHRNAFEISGSMIERILVSCTSQQDLHEWVEHLQKQTKVTS
VSNPTIKPHSVPSHTLPSHPLTPSSKHADSKPVALTPAYHTLPHPSHHGTPHTTISWGPLEPPKTPKPWS
LSCLRPAPPLRPSAALCYKEDLSKSPKTMKKLLPKRKPERKPSDEEFAVRKSTAALEEDAQILKVIEAYC
TSAKTRQTLNSTWQGTDLMHNHVLADDDQSSLDSLGRRSSLSRLEPSDLSEDSEYDSIWTAHSYRMGSAS
RKSCCSYISHQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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